Os01g0816600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os01g0816600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.02 | 0.355 | 3.13 | 0.25 | 0.0549 | 0.162 | 0.123 | 1.06 | -0.0385 | 12.3 | 78.44 | 5905 | -- | -- |
| 58.24 | 0.355 | 3.13 | 0.142 | 0.06 | 0.221 | 0.135 | -- | -0.0902 | 12.3 | 79 | 7770 | -- | -- |
| 57.08 | 0.352 | 3.13 | 0.256 | 0.0548 | 0.159 | -- | 1.07 | -0.0361 | 12.7 | 78.47 | 5914 | -- | -- |
| 58.3 | 0.356 | 3.13 | 0.142 | 0.0611 | 0.237 | -- | -- | -0.0984 | 11.1 | 79.49 | 7770 | -- | -- |
| 57.27 | 0.352 | 3.13 | 0.255 | -- | 0.162 | -- | 1.07 | -0.0369 | -- | 78.12 | 5929 | -- | -- |
| 59.17 | 0.361 | 3.11 | 0.108 | 0.0544 | -- | 0.139 | -- | -0.0102 | 12.3 | -- | -- | -- | -- |
| 59.25 | 0.36 | 3.11 | 0.114 | 0.0543 | -- | -- | -- | -0.00943 | 12.7 | -- | -- | -- | -- |
| 58.37 | 0.356 | 3.14 | 0.144 | -- | 0.247 | -- | -- | -0.11 | -- | 81 | 7333 | -- | -- |
| 58.8 | 0.357 | 3.14 | -- | 0.0595 | 0.216 | -- | -- | -0.107 | 11.1 | 81.81 | 7807 | -- | -- |
| 59.43 | 0.36 | 3.12 | 0.112 | -- | -- | -- | -- | -0.0104 | -- | -- | -- | -- | -- |
| 59.59 | 0.361 | 3.12 | -- | 0.0525 | -- | -- | -- | -0.0221 | 12.6 | -- | -- | -- | -- |
| 58.93 | 0.358 | 3.14 | -- | -- | 0.217 | -- | -- | -0.112 | -- | 81.22 | 7330 | -- | -- |
| 59.76 | 0.361 | 3.12 | -- | -- | -- | -- | -- | -0.0228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.50 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 49.60 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 16 | 1 |
| 3 | 49.72 | temperature | 30.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 4 | 49.74 | humidity | 50.0 | 30 | > th | dose independent | rect. | 16 | 1 |
| 6 | 50.09 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 7 | 50.19 | wind | 5.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 9 | 50.49 | wind | 5.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 14 | 51.07 | radiation | 10.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 18 | 51.48 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 25 | 52.30 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 45 | 54.77 | humidity | 80.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 50 | 54.92 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 54 | 54.94 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 55 | 54.94 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 57 | 54.94 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 60 | 54.94 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 1 |
| 61 | 54.94 | temperature | 10.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 62 | 54.94 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 63 | 54.96 | radiation | 1.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 68 | 55.37 | wind | 9.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 96 | 55.91 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 111 | 56.16 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 115 | 56.24 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 127 | 56.62 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 134 | 56.78 | wind | 5.0 | 10 | < th | dose independent | rect. | 10 | 10 |
| 135 | 56.78 | wind | 5.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 142 | 56.81 | wind | 9.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 161 | 57.05 | radiation | 10.0 | 30 | > th | dose independent | rect. | 16 | 18 |
| 163 | 57.10 | temperature | 30.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 165 | 57.10 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 20 | 15 |
| 166 | 57.10 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 20 | 15 |
| 172 | 57.12 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 21 | 13 |
| 175 | 57.13 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 22 | 13 |
| 180 | 57.14 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 181 | 57.14 | wind | 9.0 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 193 | 57.17 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 203 | 57.18 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 207 | 57.19 | humidity | 80.0 | 4320 | < th | dose independent | sin | 8 | NA |
| 216 | 57.20 | humidity | 80.0 | 4320 | > th | dose independent | sin | 8 | NA |
| 222 | 57.20 | humidity | 60.0 | 4320 | > th | dose dependent | sin | 7 | NA |
| 225 | 57.20 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 4 | 5 |
| 269 | 57.23 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 329 | 57.26 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 369 | 57.28 | radiation | 10.0 | 30 | > th | dose independent | rect. | 13 | 21 |
| 384 | 57.29 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 429 | 57.30 | radiation | 40.0 | 10 | > th | dose independent | rect. | 13 | 21 |
| 430 | 57.30 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 17 | 23 |
| 437 | 57.30 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 461 | 57.32 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 462 | 57.32 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 509 | 57.34 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 541 | 57.35 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 545 | 57.35 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 555 | 57.35 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 582 | 57.36 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 658 | 57.38 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 16 | 18 |
| 661 | 57.39 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 693 | 57.40 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 9 | 8 |
| 703 | 57.40 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 9 | 8 |
| 753 | 57.42 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 906 | 57.46 | radiation | 10.0 | 30 | > th | dose independent | rect. | 16 | 16 |
| 948 | 57.47 | humidity | 80.0 | 4320 | < th | dose independent | no | NA | NA |
| 960 | 57.47 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 3 | 22 |
| 990 | 57.48 | radiation | 40.0 | 10 | < th | dose independent | sin | 12 | NA |
| 1000 | 57.48 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 6 | 23 |