Os12g0210400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0210400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.16 | 0.528 | 12.5 | 0.301 | 1.77 | 0.947 | 0.106 | -0.268 | 0.974 | 22.6 | 20.54 | 1022 | -- | -- |
| 126.38 | 0.524 | 12.6 | 0.357 | 1.77 | 0.961 | 0.0769 | -- | 0.965 | 22.6 | 20.6 | 1029 | -- | -- |
| 126.21 | 0.523 | 12.5 | 0.304 | 1.77 | 0.95 | -- | -0.231 | 0.976 | 22.6 | 20.55 | 1022 | -- | -- |
| 126.33 | 0.523 | 12.5 | 0.349 | 1.77 | 0.971 | -- | -- | 0.978 | 22.6 | 20.62 | 1035 | -- | -- |
| 306.09 | 0.815 | 12.5 | 0.284 | -- | 1.56 | -- | 0.174 | 0.912 | -- | 20.3 | 878 | -- | -- |
| 151.66 | 0.577 | 12.5 | 0.736 | 1.88 | -- | -0.0262 | -- | 1.21 | 22.7 | -- | -- | -- | -- |
| 151.66 | 0.577 | 12.5 | 0.737 | 1.88 | -- | -- | -- | 1.21 | 22.7 | -- | -- | -- | -- |
| 304.94 | 0.813 | 12.5 | 0.215 | -- | 1.45 | -- | -- | 0.865 | -- | 20.81 | 833 | -- | -- |
| 129.07 | 0.529 | 12.6 | -- | 1.78 | 1.08 | -- | -- | 0.936 | 22.6 | 20.6 | 1042 | -- | -- |
| 370.57 | 0.9 | 12.4 | 0.773 | -- | -- | -- | -- | 1.22 | -- | -- | -- | -- | -- |
| 165.99 | 0.603 | 12.5 | -- | 1.89 | -- | -- | -- | 1.12 | 22.7 | -- | -- | -- | -- |
| 305.21 | 0.814 | 12.5 | -- | -- | 1.47 | -- | -- | 0.796 | -- | 21.2 | 871 | -- | -- |
| 386.34 | 0.917 | 12.5 | -- | -- | -- | -- | -- | 1.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 4 | 119.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 6 | 119.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 22 | 120.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 27 | 120.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 42 | 120.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 47 | 121.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 48 | 121.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 54 | 121.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 116 | 122.55 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 144 | 122.90 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 15 |
| 169 | 123.29 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 16 |
| 182 | 123.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 198 | 123.69 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 199 | 123.69 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 225 | 124.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 277 | 124.66 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 341 | 125.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 373 | 125.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 382 | 125.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 392 | 125.92 | humidity | 50 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 394 | 125.93 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 402 | 125.96 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 406 | 125.97 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 453 | 126.28 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 483 | 126.55 | humidity | 50 | 10 | > th | dose dependent | no | NA | NA |
| 503 | 126.66 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 509 | 126.68 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 564 | 126.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 601 | 127.04 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 625 | 127.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 659 | 127.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 662 | 127.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 664 | 127.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 685 | 127.25 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 692 | 127.29 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 701 | 127.32 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 714 | 127.37 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 717 | 127.38 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 724 | 127.39 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 812 | 127.62 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 837 | 127.74 | humidity | 90 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 839 | 127.75 | humidity | 90 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 852 | 127.82 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 14 |
| 893 | 127.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 912 | 127.96 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 933 | 128.02 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 953 | 128.06 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 956 | 128.08 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 963 | 128.09 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 978 | 128.12 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 979 | 128.12 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 980 | 128.12 | humidity | 50 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 994 | 128.16 | humidity | 90 | 10 | < th | dose dependent | rect. | 5 | 23 |