Os05g0486100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0486100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 396.38 | 0.935 | 7.53 | 0.404 | 1.59 | 5.88 | 0.12 | 6.74 | 0.399 | 23.1 | 1.692 | 1441 | -- | -- |
| 408.2 | 0.941 | 7.41 | 1.18 | 1.64 | 4.87 | 0.448 | -- | 0.682 | 23 | 2.677 | 1438 | -- | -- |
| 394.42 | 0.925 | 7.48 | 0.474 | 1.5 | 5.53 | -- | 5.03 | 0.461 | 23.1 | 2.188 | 1445 | -- | -- |
| 407.56 | 0.94 | 7.41 | 1.07 | 1.52 | 4.82 | -- | -- | 0.621 | 23 | 2.722 | 1445 | -- | -- |
| 450.13 | 0.988 | 7.41 | 0.764 | -- | 6.28 | -- | 3.88 | 0.586 | -- | 2.29 | 1514 | -- | -- |
| 711.71 | 1.25 | 7.58 | 0.138 | 1.6 | -- | -0.247 | -- | -0.115 | 22.9 | -- | -- | -- | -- |
| 711.96 | 1.25 | 7.58 | 0.149 | 1.6 | -- | -- | -- | -0.114 | 22.9 | -- | -- | -- | -- |
| 458.74 | 0.998 | 7.34 | 0.926 | -- | 5.58 | -- | -- | 0.659 | -- | 2.795 | 1526 | -- | -- |
| 436.63 | 0.973 | 7.43 | -- | 1.7 | 4.49 | -- | -- | 0.542 | 23.2 | 2.973 | 1434 | -- | -- |
| 871.48 | 1.38 | 7.54 | 0.183 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 712.54 | 1.25 | 7.58 | -- | 1.61 | -- | -- | -- | -0.13 | 22.9 | -- | -- | -- | -- |
| 486.15 | 1.03 | 7.4 | -- | -- | 5.36 | -- | -- | 0.528 | -- | 2.925 | 1536 | -- | -- |
| 872.36 | 1.38 | 7.54 | -- | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 391.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 11 | 395.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 17 | 396.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 35 | 399.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 36 | 399.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 42 | 400.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 45 | 400.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 52 | 401.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 55 | 401.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 57 | 401.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 58 | 401.41 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 66 | 401.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 82 | 401.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 106 | 402.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 112 | 404.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 123 | 406.97 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 126 | 407.77 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 127 | 407.85 | radiation | 1 | 1440 | < th | dose independent | sin | 13 | NA |
| 128 | 408.05 | radiation | 1 | 1440 | > th | dose independent | sin | 13 | NA |
| 133 | 408.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 143 | 409.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 145 | 409.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 154 | 409.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 166 | 409.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 172 | 410.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 174 | 410.14 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 200 | 410.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 228 | 410.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 233 | 410.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 238 | 410.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 240 | 410.97 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 280 | 411.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 310 | 411.50 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 365 | 411.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 367 | 411.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 377 | 411.78 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 430 | 412.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 456 | 413.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 460 | 413.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 522 | 415.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 556 | 417.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 561 | 417.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 563 | 417.37 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 565 | 417.45 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 577 | 418.10 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 593 | 418.38 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 596 | 418.44 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 598 | 418.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 608 | 418.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 647 | 419.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 650 | 420.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 687 | 421.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 688 | 421.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 693 | 421.08 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 700 | 421.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 733 | 421.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 752 | 422.15 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 772 | 422.65 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 782 | 422.99 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 828 | 424.50 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 858 | 425.99 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 869 | 426.35 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 876 | 426.61 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 880 | 426.80 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 881 | 426.81 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 883 | 426.91 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 885 | 426.92 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 886 | 426.98 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 937 | 427.87 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 954 | 428.38 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 960 | 428.51 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 965 | 428.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 986 | 429.03 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 991 | 429.16 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |