BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0801600 Os01g0801600|AK073318
(552 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0801600 Similar to Glycerol-3-phosphate dehydrogenase-... 1016 0.0
Os05g0495700 Similar to Glycerol-3-phosphate dehydrogenase-... 827 0.0
Os01g0939600 Similar to Glycerol-3-phosphate dehydrogenase-... 795 0.0
>Os01g0801600 Similar to Glycerol-3-phosphate dehydrogenase-like protein
(Fragment)
Length = 552
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/552 (90%), Positives = 502/552 (90%)
Query: 1 IPPDPVRFRFASFAGRDASSGGATGGKRPGAVPAAKXXXXXXXXXXXXXXXXXXXXXHQK 60
IPPDPVRFRFASFAGRDASSGGATGGKRPGAVPAAK HQK
Sbjct: 1 IPPDPVRFRFASFAGRDASSGGATGGKRPGAVPAAKPSQAASVSPADSDSAAKPTSSHQK 60
Query: 61 LADDSSDRVTCWATTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEEKLDELRRLLGK 120
LADDSSDRVTCWATTR TVEEKLDELRRLLGK
Sbjct: 61 LADDSSDRVTCWATTREGGEVEEGAMGGAEDAPRAAAANGHGNGATVEEKLDELRRLLGK 120
Query: 121 ADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIWRRPGRAVDRATAEHLFEVIN 180
ADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIWRRPGRAVDRATAEHLFEVIN
Sbjct: 121 ADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIWRRPGRAVDRATAEHLFEVIN 180
Query: 181 AREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCLNMIDTPLCPLKVVTNLQEAV 240
AREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCLNMIDTPLCPLKVVTNLQEAV
Sbjct: 181 AREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCLNMIDTPLCPLKVVTNLQEAV 240
Query: 241 WDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPLPRIITPTQMIS 300
WDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPLPRIITPTQMIS
Sbjct: 241 WDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPLPRIITPTQMIS 300
Query: 301 NATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQPHFIVWDNSDLI 360
NATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQPHFIVWDNSDLI
Sbjct: 301 NATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQPHFIVWDNSDLI 360
Query: 361 THEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSEMIYITHLLEEEPEKLAGPLL 420
THEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSEMIYITHLLEEEPEKLAGPLL
Sbjct: 361 THEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSEMIYITHLLEEEPEKLAGPLL 420
Query: 421 ADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVNAFYELLSQDSLSVMH 480
ADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVNAFYELLSQDSLSVMH
Sbjct: 421 ADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVNAFYELLSQDSLSVMH 480
Query: 481 PEANRSVAPVEMCPILKALYKILIKRELPPDSILQAIRDETMYDPRERIEMAQGHSLYRP 540
PEANRSVAPVEMCPILKALYKILIKRELPPDSILQAIRDETMYDPRERIEMAQGHSLYRP
Sbjct: 481 PEANRSVAPVEMCPILKALYKILIKRELPPDSILQAIRDETMYDPRERIEMAQGHSLYRP 540
Query: 541 SLLGQPKGDAKA 552
SLLGQPKGDAKA
Sbjct: 541 SLLGQPKGDAKA 552
>Os05g0495700 Similar to Glycerol-3-phosphate dehydrogenase-like protein
(Fragment)
Length = 552
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/440 (90%), Positives = 416/440 (94%)
Query: 110 KLDELRRLLGKADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIWRRPGRAVDR 169
KLDELRR +GKADGD LRIVGVG GAWGS FCAL+QDAYG RDK QVR+WRRPGRAVDR
Sbjct: 109 KLDELRRRMGKADGDLLRIVGVGGGAWGSAFCALLQDAYGRHRDKAQVRVWRRPGRAVDR 168
Query: 170 ATAEHLFEVINAREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCLNMIDTPLCP 229
ATAEHLFEVIN+REDVLRRLIRRCAYLKYVE RLGDRTLYADEILRDGFCLNM+DTPLCP
Sbjct: 169 ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMVDTPLCP 228
Query: 230 LKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPL 289
LKVVTNLQEAVWDADIVINGLPST+TREVFGEIGRYWKERI P+I+SLAKGIEAS+DP+
Sbjct: 229 LKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDPV 288
Query: 290 PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP 349
PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP
Sbjct: 289 PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP 348
Query: 350 HFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSEMIYITHLLE 409
HFIVWDNSDLITHEVMGGLKN+YAIGAGMVAALTNESATSKSVYF+LCTSEMIYITHLL
Sbjct: 349 HFIVWDNSDLITHEVMGGLKNIYAIGAGMVAALTNESATSKSVYFSLCTSEMIYITHLLA 408
Query: 410 EEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVNAFYE 469
E+PEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAV+AFYE
Sbjct: 409 EDPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVHAFYE 468
Query: 470 LLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPDSILQAIRDETMYDPRERI 529
LLSQ SLSV HPE + VAPVE+CPILK LYKILIKREL DSILQAIRDE+MYDPRERI
Sbjct: 469 LLSQSSLSVTHPEVKKLVAPVELCPILKTLYKILIKRELATDSILQAIRDESMYDPRERI 528
Query: 530 EMAQGHSLYRPSLLGQPKGD 549
EM+Q LYRPSLLG PK D
Sbjct: 529 EMSQRQCLYRPSLLGLPKVD 548
>Os01g0939600 Similar to Glycerol-3-phosphate dehydrogenase-like protein
(Fragment)
Length = 456
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/439 (85%), Positives = 409/439 (93%)
Query: 108 EEKLDELRRLLGKADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIWRRPGRAV 167
EE+LDELRRLLGK+DGD L+IVG+GAGAWGSVF AL+QDAYG R+KVQ+RIWRR GR+V
Sbjct: 18 EERLDELRRLLGKSDGDLLKIVGIGAGAWGSVFAALLQDAYGRFREKVQIRIWRRAGRSV 77
Query: 168 DRATAEHLFEVINAREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCLNMIDTPL 227
DR TAEHLFEVIN+REDVLRRLIRRCAYLKYVE RLGDRTLYADEILRDGFCLNMIDTPL
Sbjct: 78 DRTTAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMIDTPL 137
Query: 228 CPLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLD 287
CPLKVVTNLQEAVWDADIV+NGLPST+TREVF EI +YWKERI+ P+I+SLAKGIEASLD
Sbjct: 138 CPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERISVPVIISLAKGIEASLD 197
Query: 288 PLPRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLR 347
P+PRIITPTQMIS+ATGVP ENILYLGGPNIASEIYNKEYANARICG++KWRKPLAKFLR
Sbjct: 198 PIPRIITPTQMISSATGVPTENILYLGGPNIASEIYNKEYANARICGSNKWRKPLAKFLR 257
Query: 348 QPHFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSEMIYITHL 407
QPHFIVWDNSDL+THEVMGGLKNVYAIGAGMVAALTNESATSKSVYFA CTSEMI+ITHL
Sbjct: 258 QPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHL 317
Query: 408 LEEEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVNAF 467
L E+PEKLAGPLLADTYVTLLKGRNAWYGQ LAKGEL+ +MGDSIKGKG IQG+SAV AF
Sbjct: 318 LTEQPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSIKGKGMIQGISAVGAF 377
Query: 468 YELLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPDSILQAIRDETMYDPRE 527
+ELLSQ SLSV HPE N+ VAP E+CPILK LY+ILIKREL ILQA+RDETM DPRE
Sbjct: 378 FELLSQPSLSVQHPEENKQVAPAELCPILKRLYRILIKRELSTRDILQALRDETMNDPRE 437
Query: 528 RIEMAQGHSLYRPSLLGQP 546
RIEMAQ H+ YRPSLLG+P
Sbjct: 438 RIEMAQSHAFYRPSLLGKP 456
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,015,803
Number of extensions: 723393
Number of successful extensions: 1745
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1744
Number of HSP's successfully gapped: 3
Length of query: 552
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 446
Effective length of database: 11,501,117
Effective search space: 5129498182
Effective search space used: 5129498182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)