BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0801100 Os01g0801100|AK102132
(310 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0801100 Similar to Apurinic endonuclease-redox protein... 649 0.0
Os01g0801000 Similar to Apurinic endonuclease-redox protein... 431 e-121
Os12g0279600 Exodeoxyribonuclease III xth family protein 99 6e-21
>Os01g0801100 Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or
apyrimidinic site) lyase) (EC 4.2.99.18)
Length = 310
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MSSMAGLGASQHGYPPRSHEPWTKLVHRERLPEWFAYNPKTMRPPPLSHDTKCMKILSWN 60
MSSMAGLGASQHGYPPRSHEPWTKLVHRERLPEWFAYNPKTMRPPPLSHDTKCMKILSWN
Sbjct: 1 MSSMAGLGASQHGYPPRSHEPWTKLVHRERLPEWFAYNPKTMRPPPLSHDTKCMKILSWN 60
Query: 61 INGLHDVVTTKGFSARDLAQRENFDVLCLQETHLEEKDVEKFKNLIADYDSYWSCSVSRL 120
INGLHDVVTTKGFSARDLAQRENFDVLCLQETHLEEKDVEKFKNLIADYDSYWSCSVSRL
Sbjct: 61 INGLHDVVTTKGFSARDLAQRENFDVLCLQETHLEEKDVEKFKNLIADYDSYWSCSVSRL 120
Query: 121 GYSGTAVISRVKPISVQYGIGIREHDHEGRVITLEFDGFYLVNAYVPNSGRFLRRLNYRV 180
GYSGTAVISRVKPISVQYGIGIREHDHEGRVITLEFDGFYLVNAYVPNSGRFLRRLNYRV
Sbjct: 121 GYSGTAVISRVKPISVQYGIGIREHDHEGRVITLEFDGFYLVNAYVPNSGRFLRRLNYRV 180
Query: 181 NNWDPCFSNYVKILEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFS 240
NNWDPCFSNYVKILEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFS
Sbjct: 181 NNWDPCFSNYVKILEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFS 240
Query: 241 SKGLVDTFRKQHPNAVGYTFWGENQRITNKGWRLDYFLASESITDKVHDSYILPDVSFSD 300
SKGLVDTFRKQHPNAVGYTFWGENQRITNKGWRLDYFLASESITDKVHDSYILPDVSFSD
Sbjct: 241 SKGLVDTFRKQHPNAVGYTFWGENQRITNKGWRLDYFLASESITDKVHDSYILPDVSFSD 300
Query: 301 HSPIGLVLKL 310
HSPIGLVLKL
Sbjct: 301 HSPIGLVLKL 310
>Os01g0801000 Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or
apyrimidinic site) lyase) (EC 4.2.99.18)
Length = 499
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 199/296 (67%), Positives = 238/296 (80%), Gaps = 4/296 (1%)
Query: 19 HEPWTKLVHRERLPEWFAYNPKTMRPPPLSHDTKCMKILSWNINGLHDVVTTKGFSARDL 78
EPWT LVH++ P W YNPK MR P LS DTK +KILSWN+NGL ++ ++GFS L
Sbjct: 204 EEPWTVLVHKKPQPAWIPYNPKVMRSPSLSKDTKALKILSWNVNGLKALLKSRGFSIHQL 263
Query: 79 AQRENFDVLCLQETHLEEKDVEKFK-NLIADYD-SYWSCSVSRLGYSGTAVISRVKPISV 136
AQRE+FD+LCLQET ++EKDVE K L+ Y S+W+CSVS+LGYSGTA+ISRVKP+S+
Sbjct: 264 AQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHSFWTCSVSKLGYSGTAIISRVKPLSI 323
Query: 137 QYGIGIREHDHEGRVITLEFDGFYLVNAYVPNSGRFLRRLNYRVNNWDPCFSNYVKILEK 196
+YG+G+ +HD EGRV+T+EF+ FYL+ AYVPNSG L+RL YRV WDP NY+K LEK
Sbjct: 324 KYGLGVPDHDTEGRVVTVEFNDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKDLEK 383
Query: 197 SKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVDTFRKQHPNAV 256
SKPVI+ GDLNCA Q IDIH+P +SAGFTIEERESFETNF SKG VDTFRKQHPN V
Sbjct: 384 SKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEERESFETNFLSKGFVDTFRKQHPNVV 443
Query: 257 GYTFWG--ENQRITNKGWRLDYFLASESITDKVHDSYILPDVSFSDHSPIGLVLKL 310
GY++WG N R TNKGWRLDYFL SESI ++VHDSYI+PD+S SDHSP+GLVLKL
Sbjct: 444 GYSYWGYRHNARKTNKGWRLDYFLVSESIAERVHDSYIIPDISASDHSPLGLVLKL 499
>Os12g0279600 Exodeoxyribonuclease III xth family protein
Length = 379
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 138/321 (42%), Gaps = 62/321 (19%)
Query: 45 PPLSHDTKCMKILSWNINGLHDVVTTKGFSARDLAQRENFDVLCLQETHL---------- 94
PP + + + ++WN N L + + + R + DV+C+QE +
Sbjct: 51 PPAPREEEPRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAGSKGAPK 110
Query: 95 -------------EEKDVEKFKNL----IADYDSYWSCSVSRLGYSGTAVISRVK--PIS 135
+EK V + L DY +WS S S+ Y+GTA+I + K P
Sbjct: 111 NPGQLKDDTSSSRDEKQV-VLRALSSPPFKDYRVWWSLSDSK--YAGTAMIIKKKFEPKK 167
Query: 136 VQYGIGIREHDHE--GRVITLEFDGFYLVNAYVPNSGRFLRRLNY-RVNNWDPCFSNYVK 192
V + + HE GRVI EF+ F L+N Y PN+G ++ R WD +V+
Sbjct: 168 VSFNLDRTSSKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQ 227
Query: 193 ILEKSKPVIVAGDLNCARQSIDIHN-------------PPAKTKSA--GFTIEERESFET 237
++ KP+I GDLN + + ID+ + PP K GFT+ ER F
Sbjct: 228 QVD--KPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCGQPGFTLSERRRFGN 285
Query: 238 NFSSKGLVDTFRKQHPNA---VGYTFWGEN-QRITNKGWRLDYFLASESITDKVHDSYI- 292
S LVD +R H G+++ G + K R+DYFL SE + D++ I
Sbjct: 286 ILSQGKLVDAYRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDYFLVSEKLKDQIVSCDIH 345
Query: 293 -----LPDVSFSDHSPIGLVL 308
L SDH P+ L L
Sbjct: 346 GRGIELEGFYGSDHCPVSLEL 366
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,576,330
Number of extensions: 487060
Number of successful extensions: 983
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 977
Number of HSP's successfully gapped: 3
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)