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Os01g0801000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.72 (0.0242) R2 : 0.607
β1 : -1.88 (0.0886) R2dD : 0.401 R2D : 0.247
β2 : 0.762 (0.0629) R2dC : 0.127 R2C : 0.0891
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.705 (0.0516) R2dN8 : 0.215 R2N8 : 0.0738
σ : 0.455
deviance : 94.31
__
_____
C
peak time of C : 18.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.09 0.418 9.74 -1.89 0.86 1 0.681 1.92 -0.754 20.8 13.6 95 -- --
83.31 0.425 9.73 -1.88 0.848 0.881 0.00968 -- -0.743 20.8 8.389 127 -- --
79.69 0.416 9.74 -1.91 0.824 1 -- 1.66 -0.752 20.6 16.48 127 -- --
83.28 0.425 9.74 -1.89 0.843 0.875 -- -- -0.75 20.9 7.321 126 -- --
91.65 0.446 9.73 -1.93 -- 0.938 -- 0.502 -0.818 -- -19.27 861 -- --
94.07 0.455 9.72 -1.87 0.761 -- 0.307 -- -0.706 18.8 -- -- -- --
94.31 0.455 9.72 -1.88 0.762 -- -- -- -0.705 18.8 -- -- -- --
92.08 0.447 9.73 -1.96 -- 0.946 -- -- -0.825 -- -43.04 855 -- --
174.79 0.616 9.68 -- 0.785 0.846 -- -- -0.531 19.8 33.07 100 -- --
124.65 0.522 9.71 -1.89 -- -- -- -- -0.72 -- -- -- -- --
187.08 0.64 9.67 -- 0.784 -- -- -- -0.496 18.7 -- -- -- --
192.81 0.647 9.69 -- -- 0.825 -- -- -0.602 -- 0.2792 800 -- --
219.18 0.691 9.66 -- -- -- -- -- -0.51 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.32 humidity 90.0 270 < th dose independent rect. 7 7
3 74.14 temperature 15.0 90 > th dose dependent rect. 8 7
5 74.17 radiation 40.0 270 < th dose dependent rect. 3 14
7 74.34 radiation 40.0 90 < th dose independent rect. 5 15
8 74.37 humidity 60.0 90 > th dose dependent rect. 5 14
11 74.49 radiation 1.0 270 > th dose dependent rect. 7 6
14 74.53 humidity 80.0 270 > th dose dependent rect. 3 16
15 74.54 radiation 1.0 270 > th dose dependent rect. 8 4
16 74.56 temperature 10.0 270 > th dose dependent rect. 8 5
18 74.56 radiation 20.0 270 < th dose dependent rect. 3 6
31 74.94 radiation 1.0 270 > th dose dependent rect. 17 20
35 75.07 radiation 10.0 270 > th dose independent rect. 7 7
36 75.08 precipitation 0.1 270 < th dose independent rect. 6 22
37 75.08 precipitation 0.1 270 < th dose dependent rect. 6 22
55 75.15 radiation 20.0 270 < th dose dependent rect. 3 10
56 75.16 radiation 10.0 270 > th dose independent rect. 8 5
58 75.20 wind 7.0 270 < th dose independent rect. 7 20
62 75.25 radiation 40.0 270 < th dose independent rect. 11 21
72 75.46 precipitation 0.1 270 < th dose independent rect. 7 20
73 75.46 precipitation 0.1 270 < th dose dependent rect. 7 20
75 75.49 temperature 15.0 10 > th dose dependent rect. 9 6
78 75.50 humidity 70.0 270 > th dose dependent rect. 3 12
81 75.52 radiation 40.0 90 < th dose dependent rect. 5 14
84 75.54 humidity 70.0 270 > th dose dependent rect. 3 6
111 75.72 humidity 90.0 270 > th dose independent rect. 3 17
121 75.79 wind 7.0 270 < th dose independent rect. 8 18
133 75.90 radiation 10.0 270 > th dose independent rect. 17 21
139 75.95 humidity 70.0 270 > th dose dependent sin 5 NA
142 75.97 humidity 70.0 90 > th dose dependent rect. 5 6
156 76.07 radiation 40.0 270 < th dose independent rect. 3 14
187 76.17 radiation 10.0 270 < th dose independent rect. 3 6
197 76.23 radiation 1.0 270 < th dose independent rect. 4 14
198 76.23 radiation 1.0 270 > th dose dependent sin 6 NA
202 76.24 precipitation 0.1 270 < th dose independent rect. 8 18
204 76.24 precipitation 0.1 270 < th dose dependent rect. 8 18
224 76.33 radiation 40.0 10 < th dose independent rect. 5 15
269 76.49 humidity 80.0 270 > th dose independent rect. 2 8
273 76.51 radiation 40.0 270 < th dose dependent sin 5 NA
298 76.57 humidity 70.0 90 > th dose dependent rect. 5 8
300 76.59 precipitation 0.1 270 < th dose independent rect. 18 9
301 76.59 radiation 20.0 270 < th dose dependent sin 4 NA
303 76.59 precipitation 0.1 270 < th dose dependent rect. 18 9
310 76.63 humidity 70.0 90 > th dose dependent rect. 5 10
313 76.64 humidity 70.0 30 > th dose independent rect. 5 15
315 76.64 radiation 1.0 90 > th dose dependent rect. 8 10
320 76.65 radiation 1.0 90 > th dose dependent rect. 8 21
322 76.66 humidity 80.0 270 > th dose independent rect. 3 6
348 76.74 humidity 90.0 270 < th dose independent rect. 2 12
350 76.75 humidity 60.0 90 > th dose dependent rect. 5 4
373 76.79 humidity 80.0 90 < th dose independent rect. 23 16
377 76.80 radiation 40.0 90 < th dose independent rect. 11 23
380 76.81 wind 7.0 270 < th dose independent rect. 8 6
388 76.86 radiation 1.0 10 > th dose dependent rect. 9 6
391 76.87 humidity 80.0 270 < th dose independent rect. 23 14
413 76.94 radiation 40.0 270 < th dose independent rect. 13 19
418 76.96 humidity 80.0 90 > th dose independent rect. 5 6
419 76.96 humidity 80.0 270 > th dose independent rect. 2 12
432 77.02 temperature 10.0 270 > th dose dependent rect. 3 4
454 77.08 radiation 20.0 270 < th dose independent rect. 3 15
462 77.09 radiation 1.0 10 > th dose dependent rect. 8 10
512 77.15 humidity 80.0 90 > th dose independent rect. 5 4
598 77.37 atmosphere 1010.0 270 < th dose independent rect. 3 4
608 77.39 wind 7.0 270 < th dose independent rect. 3 4
614 77.41 temperature 15.0 270 > th dose independent rect. 7 20
617 77.42 temperature 10.0 270 > th dose independent rect. 3 4
619 77.42 temperature 30.0 270 < th dose independent rect. 3 4
620 77.42 humidity 50.0 270 > th dose independent rect. 3 4
622 77.42 atmosphere 995.0 270 > th dose independent rect. 3 4
628 77.42 humidity 90.0 90 < th dose dependent rect. 8 7
635 77.45 radiation 10.0 270 > th dose independent sin 4 NA
651 77.48 humidity 90.0 270 < th dose independent sin 3 NA
652 77.48 wind 7.0 270 < th dose independent rect. 18 9
694 77.54 radiation 20.0 30 > th dose independent rect. 8 7
713 77.61 temperature 15.0 270 > th dose independent rect. 7 7
721 77.63 radiation 40.0 10 < th dose dependent rect. 6 14
740 77.68 temperature 10.0 270 > th dose dependent rect. 4 2
748 77.70 wind 1.0 90 > th dose independent rect. 9 6
749 77.70 temperature 15.0 90 > th dose independent rect. 9 6
754 77.71 humidity 80.0 270 > th dose independent rect. 4 2
842 77.84 wind 7.0 270 < th dose independent rect. 2 6
853 77.86 atmosphere 995.0 270 > th dose independent rect. 14 17
854 77.86 temperature 15.0 270 > th dose independent rect. 8 18
857 77.86 radiation 1.0 90 > th dose dependent sin 0 NA
874 77.88 temperature 10.0 270 > th dose independent rect. 2 6
876 77.88 temperature 30.0 270 < th dose independent rect. 2 6
877 77.88 humidity 50.0 270 > th dose independent rect. 2 6
879 77.88 atmosphere 995.0 270 > th dose independent rect. 2 6
880 77.88 atmosphere 1015.0 270 < th dose independent rect. 2 6
885 77.88 wind 7.0 90 < th dose dependent rect. 5 4
889 77.90 radiation 40.0 270 < th dose independent rect. 2 6
906 77.94 radiation 30.0 90 < th dose independent rect. 5 4
907 77.94 precipitation 0.1 270 < th dose independent rect. 7 7
911 77.94 precipitation 0.1 270 < th dose dependent rect. 7 7
953 78.02 humidity 80.0 270 > th dose independent sin 5 NA
955 78.02 precipitation 0.1 90 < th dose independent rect. 9 6
958 78.02 precipitation 0.1 90 < th dose dependent rect. 9 6
968 78.05 wind 9.0 270 < th dose dependent rect. 3 4
969 78.06 wind 3.0 90 < th dose independent rect. 5 4
987 78.07 radiation 40.0 270 < th dose dependent rect. 13 19
991 78.08 humidity 90.0 270 < th dose dependent rect. 19 18