BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0801000 Os01g0801000|AK101426
(499 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0801000 Similar to Apurinic endonuclease-redox protein... 995 0.0
Os01g0801100 Similar to Apurinic endonuclease-redox protein... 430 e-120
Os12g0279600 Exodeoxyribonuclease III xth family protein 111 2e-24
>Os01g0801000 Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or
apyrimidinic site) lyase) (EC 4.2.99.18)
Length = 499
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/499 (96%), Positives = 483/499 (96%)
Query: 1 MPLLLRGGSLFRLYGCGCGLPSANFSPSKLALIRLSLMMAETRATYSRRAASKNTDIKKD 60
MPLLLRGGSLFRLYGCGCGLPSANFSPSKLALIRLSLMMAETRATYSRRAASKNTDIKKD
Sbjct: 1 MPLLLRGGSLFRLYGCGCGLPSANFSPSKLALIRLSLMMAETRATYSRRAASKNTDIKKD 60
Query: 61 DEHVLEKEDVAESKLEIEQLRNDPDRLQSMTVKELREITRMMGIPVKGNKKDLVSALMDS 120
DEHVLEKEDVAESKLEIEQLRNDPDRLQSMTVKELREITRMMGIPVKGNKKDLVSALMDS
Sbjct: 61 DEHVLEKEDVAESKLEIEQLRNDPDRLQSMTVKELREITRMMGIPVKGNKKDLVSALMDS 120
Query: 121 LGKVGTSSVEKIGVSEVPSKRKGASVVVEQNIDSSEVISETPSKRSRAKNKGTAEESSGA 180
LGKVGTSSVEKIGVSEVPSKRKGASVVVEQNIDSSEVISETPSKRSRAKNKGTAEESSGA
Sbjct: 121 LGKVGTSSVEKIGVSEVPSKRKGASVVVEQNIDSSEVISETPSKRSRAKNKGTAEESSGA 180
Query: 181 NXXXXXXXXXXXXXXXXGASVDHEEPWTVLVHKKPQPAWIPYNPKVMRSPSLSKDTKALK 240
N GASVDHEEPWTVLVHKKPQPAWIPYNPKVMRSPSLSKDTKALK
Sbjct: 181 NVKQSKTSVQKKKLVVQGASVDHEEPWTVLVHKKPQPAWIPYNPKVMRSPSLSKDTKALK 240
Query: 241 ILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHSFW 300
ILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHSFW
Sbjct: 241 ILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHSFW 300
Query: 301 TCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVVTVEFNDFYLLTAYVPNSGDGL 360
TCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVVTVEFNDFYLLTAYVPNSGDGL
Sbjct: 301 TCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVVTVEFNDFYLLTAYVPNSGDGL 360
Query: 361 KRLTYRVTEWDPSLGNYMKDLEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEERE 420
KRLTYRVTEWDPSLGNYMKDLEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEERE
Sbjct: 361 KRLTYRVTEWDPSLGNYMKDLEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEERE 420
Query: 421 SFETNFLSKGFVDTFRKQHPNVVGYSYWGYRHNARKTNKGWRLDYFLVSESIAERVHDSY 480
SFETNFLSKGFVDTFRKQHPNVVGYSYWGYRHNARKTNKGWRLDYFLVSESIAERVHDSY
Sbjct: 421 SFETNFLSKGFVDTFRKQHPNVVGYSYWGYRHNARKTNKGWRLDYFLVSESIAERVHDSY 480
Query: 481 IIPDISASDHSPLGLVLKL 499
IIPDISASDHSPLGLVLKL
Sbjct: 481 IIPDISASDHSPLGLVLKL 499
>Os01g0801100 Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or
apyrimidinic site) lyase) (EC 4.2.99.18)
Length = 310
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 199/296 (67%), Positives = 238/296 (80%), Gaps = 4/296 (1%)
Query: 204 EEPWTVLVHKKPQPAWIPYNPKVMRSPSLSKDTKALKILSWNVNGLKALLKSRGFSIHQL 263
EPWT LVH++ P W YNPK MR P LS DTK +KILSWN+NGL ++ ++GFS L
Sbjct: 19 HEPWTKLVHRERLPEWFAYNPKTMRPPPLSHDTKCMKILSWNINGLHDVVTTKGFSARDL 78
Query: 264 AQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHSFWTCSVSKLGYSGTAIISRVKPLSI 323
AQRE+FD+LCLQET ++EKDVE K L+ Y S+W+CSVS+LGYSGTA+ISRVKP+S+
Sbjct: 79 AQRENFDVLCLQETHLEEKDVEKFK-NLIADYD-SYWSCSVSRLGYSGTAVISRVKPISV 136
Query: 324 KYGLGVPDHDTEGRVVTVEFNDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKDLEK 383
+YG+G+ +HD EGRV+T+EF+ FYL+ AYVPNSG L+RL YRV WDP NY+K LEK
Sbjct: 137 QYGIGIREHDHEGRVITLEFDGFYLVNAYVPNSGRFLRRLNYRVNNWDPCFSNYVKILEK 196
Query: 384 SKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEERESFETNFLSKGFVDTFRKQHPNVV 443
SKPVI+ GDLNCA Q IDIH+P +SAGFTIEERESFETNF SKG VDTFRKQHPN V
Sbjct: 197 SKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVDTFRKQHPNAV 256
Query: 444 GYSYWGYRHNARKTNKGWRLDYFLVSESIAERVHDSYIIPDISASDHSPLGLVLKL 499
GY++WG N R TNKGWRLDYFL SESI ++VHDSYI+PD+S SDHSP+GLVLKL
Sbjct: 257 GYTFWG--ENQRITNKGWRLDYFLASESITDKVHDSYILPDVSFSDHSPIGLVLKL 310
>Os12g0279600 Exodeoxyribonuclease III xth family protein
Length = 379
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 149/324 (45%), Gaps = 62/324 (19%)
Query: 229 SPSLSKDTKALKILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKM--------- 279
SP ++ + + ++WN N L +KS + Q R D D++C+QE +M
Sbjct: 50 SPPAPREEEPRRFVTWNANSLLLRMKSDWPAFCQFVSRVDPDVICVQEVRMPAAGSKGAP 109
Query: 280 ----QEKD------------VEVIKEGLLEGYTHSFWTCSVSKLGYSGTAII--SRVKPL 321
Q KD + + + Y +W+ S SK Y+GTA+I + +P
Sbjct: 110 KNPGQLKDDTSSSRDEKQVVLRALSSPPFKDY-RVWWSLSDSK--YAGTAMIIKKKFEPK 166
Query: 322 SIKYGLG--VPDHDTEGRVVTVEFNDFYLLTAYVPNSGDGLKRLTY-RVTEWDPSLGNYM 378
+ + L H+ +GRV+ EF F LL Y PN+G + ++ R +WD + ++
Sbjct: 167 KVSFNLDRTSSKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV 226
Query: 379 KDLEKSKPVILTGDLNCAHQEIDIHDP------------AGNRRSA---GFTIEERESFE 423
+ ++ KP+I GDLN +H+EID+ P N+ GFT+ ER F
Sbjct: 227 QQVD--KPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCGQPGFTLSERRRF- 283
Query: 424 TNFLSKG-FVDTFRKQHPNV---VGYSYWGYRHNARKTNKGWRLDYFLVSESIAERVHDS 479
N LS+G VD +R H G+S+ G+ + K R+DYFLVSE + +++
Sbjct: 284 GNILSQGKLVDAYRYLHKEKDMDCGFSWSGH-PIGKYRGKRMRIDYFLVSEKLKDQIVSC 342
Query: 480 YI------IPDISASDHSPLGLVL 497
I + SDH P+ L L
Sbjct: 343 DIHGRGIELEGFYGSDHCPVSLEL 366
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,213,617
Number of extensions: 662697
Number of successful extensions: 1281
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1276
Number of HSP's successfully gapped: 3
Length of query: 499
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 394
Effective length of database: 11,553,331
Effective search space: 4552012414
Effective search space used: 4552012414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)