Os01g0801100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0801100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.95 | 0.27 | 10.1 | 0.893 | 1.82 | -0.319 | -0.663 | -0.261 | 0.102 | 19 | 20.2 | 547 | -- | -- |
| 32.85 | 0.267 | 10.1 | 0.932 | 1.83 | -0.274 | -0.771 | -- | 0.123 | 19 | 20.9 | 559 | -- | -- |
| 34 | 0.272 | 10.1 | 0.898 | 1.83 | -0.352 | -- | -0.416 | 0.093 | 19 | 20.2 | 547 | -- | -- |
| 34.42 | 0.273 | 10.1 | 0.954 | 1.82 | -0.282 | -- | -- | 0.122 | 19 | 20.9 | 560 | -- | -- |
| 201.67 | 0.665 | 10.1 | 0.919 | -- | -0.14 | -- | 0.368 | 0.0617 | -- | 20.2 | 547 | -- | -- |
| 35.47 | 0.279 | 10.1 | 0.836 | 1.78 | -- | -0.792 | -- | 0.0527 | 19 | -- | -- | -- | -- |
| 37.1 | 0.285 | 10.1 | 0.851 | 1.78 | -- | -- | -- | 0.0507 | 19 | -- | -- | -- | -- |
| 200.15 | 0.662 | 10.1 | 0.764 | -- | 0.19 | -- | -- | -0.0757 | -- | 24.7 | 2822 | -- | -- |
| 53.07 | 0.339 | 10.2 | -- | 1.64 | 0.294 | -- | -- | -0.0782 | 18.9 | 26.5 | 679 | -- | -- |
| 203.51 | 0.667 | 10.1 | 0.815 | -- | -- | -- | -- | 0.018 | -- | -- | -- | -- | -- |
| 56.17 | 0.351 | 10.2 | -- | 1.77 | -- | -- | -- | -0.0441 | 19 | -- | -- | -- | -- |
| 136.42 | 0.544 | 10.2 | -- | -- | 1.24 | -- | -- | -0.317 | -- | 26.6 | 515 | -- | -- |
| 221.03 | 0.694 | 10.1 | -- | -- | -- | -- | -- | -0.0724 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.94 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 2 | 29.24 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 4 | 29.39 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 6 | 29.44 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 8 | 29.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 23 |
| 9 | 29.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 10 | 29.61 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 11 | 29.65 | wind | 5.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 13 | 29.70 | wind | 9.0 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 29 | 29.96 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 32 | 29.96 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 33 | 29.96 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 34 | 29.96 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 37 | 29.98 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 61 | 30.14 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 74 | 30.23 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 85 | 30.27 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 86 | 30.27 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 94 | 30.30 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 104 | 30.35 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 106 | 30.37 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 108 | 30.37 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 113 | 30.38 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 120 | 30.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 122 | 30.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 123 | 30.39 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 126 | 30.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 132 | 30.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 142 | 30.42 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 149 | 30.45 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 180 | 30.48 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 183 | 30.49 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 196 | 30.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 198 | 30.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 200 | 30.57 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 242 | 30.64 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 253 | 30.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 256 | 30.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 262 | 30.67 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 275 | 30.73 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 277 | 30.73 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 278 | 30.73 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 280 | 30.73 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 281 | 30.73 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 282 | 30.73 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 284 | 30.73 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 293 | 30.74 | wind | 9.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 296 | 30.75 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 5 |
| 299 | 30.75 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 306 | 30.77 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 316 | 30.79 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 324 | 30.81 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 341 | 30.81 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 366 | 30.86 | wind | 5.0 | 270 | < th | dose independent | rect. | 16 | 10 |
| 373 | 30.88 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 382 | 30.89 | wind | 9.0 | 30 | < th | dose dependent | rect. | 9 | 10 |
| 389 | 30.91 | temperature | 30.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 409 | 30.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 423 | 30.95 | wind | 9.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 470 | 31.00 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 486 | 31.02 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 560 | 31.09 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 564 | 31.10 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 568 | 31.11 | temperature | 20.0 | 30 | > th | dose independent | rect. | 15 | 18 |
| 574 | 31.12 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 9 | 2 |
| 603 | 31.14 | wind | 7.0 | 10 | < th | dose independent | rect. | 7 | 23 |
| 604 | 31.14 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 618 | 31.16 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 2 |
| 734 | 31.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 13 |
| 739 | 31.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 780 | 31.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 13 |
| 786 | 31.25 | wind | 9.0 | 270 | < th | dose dependent | rect. | 16 | 10 |
| 794 | 31.26 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 807 | 31.26 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 13 |
| 826 | 31.28 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 827 | 31.28 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 887 | 31.32 | wind | 5.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 891 | 31.32 | wind | 3.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 920 | 31.34 | temperature | 30.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 945 | 31.36 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 963 | 31.38 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 971 | 31.39 | wind | 9.0 | 720 | < th | dose independent | rect. | 22 | 21 |
| 1000 | 31.41 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 19 |