BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0801100 Os01g0801100|AK102132
(310 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41460.1 | chr2:17285731-17288769 FORWARD LENGTH=537 412 e-115
AT3G60950.1 | chr3:22524475-22529770 FORWARD LENGTH=628 97 8e-21
AT3G48425.1 | chr3:17931910-17934493 FORWARD LENGTH=365 84 7e-17
AT4G36050.2 | chr4:17052323-17055044 REVERSE LENGTH=611 66 3e-11
AT3G61030.1 | chr3:22585655-22590452 FORWARD LENGTH=510 60 1e-09
>AT2G41460.1 | chr2:17285731-17288769 FORWARD LENGTH=537
Length = 536
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/299 (63%), Positives = 229/299 (76%), Gaps = 4/299 (1%)
Query: 16 PRSHEPWTKLVHRERLPEWFAYNPKTMRPPPLSHDTKCMKILSWNINGLHDVVTTKGFSA 75
P EPWT L H++ +W AYNPKTMRPPPL TKC+K+++WN+NGL ++ + FSA
Sbjct: 238 PSQSEPWTVLAHKKPQKDWKAYNPKTMRPPPLPEGTKCVKVMTWNVNGLRGLLKFESFSA 297
Query: 76 RDLAQRENFDVLCLQETHLEEKDVEKFK-NLIADYD-SYWSCSVSRLGYSGTAVISRVKP 133
LAQRENFD+LCLQET L+ KDVE+ K LI YD S+WSCSVS+LGYSGTA+ISR+KP
Sbjct: 298 LQLAQRENFDILCLQETKLQVKDVEEIKKTLIDGYDHSFWSCSVSKLGYSGTAIISRIKP 357
Query: 134 ISVQYGIGIREHDHEGRVITLEFDGFYLVNAYVPNSGRFLRRLNYRVNNWDPCFSNYVKI 193
+SV+YG G+ HD EGR++T EFD FYL+N YVPNSG L+RL+YR+ WD SN++K
Sbjct: 358 LSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSYRIEEWDRTLSNHIKE 417
Query: 194 LEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVDTFRKQHP 253
LEKSKPV++ GDLNCA + IDI NP +SAGFTIEER+SF N KG VDTFRKQHP
Sbjct: 418 LEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKGFVDTFRKQHP 477
Query: 254 NAVGYTFWG--ENQRITNKGWRLDYFLASESITDKVHDSYILPDVSFSDHSPIGLVLKL 310
VGYT+WG R TNKGWRLDYFL S+SI VHDSYILPD++ SDH PIGL+LKL
Sbjct: 478 GVVGYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHDSYILPDINGSDHCPIGLILKL 536
>AT3G60950.1 | chr3:22524475-22529770 FORWARD LENGTH=628
Length = 627
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 63/94 (67%), Gaps = 6/94 (6%)
Query: 131 VKPISVQYGIGIR--EHDHEGRVITLEFDGFYLVNAYVPNS----GRFLRRLNYRVNNWD 184
+KP+ V+YG G+ +HD EGR++T EFD FYL++ YVPNS + + +WD
Sbjct: 502 IKPLRVRYGTGLSGSDHDMEGRMVTAEFDSFYLISTYVPNSVDGLKGLVLLKLNAIEDWD 561
Query: 185 PCFSNYVKILEKSKPVIVAGDLNCARQSIDIHNP 218
SN++K LEKSKPV++ GDLNCA + IDI NP
Sbjct: 562 RTLSNHIKDLEKSKPVVLTGDLNCAHEEIDIFNP 595
>AT3G48425.1 | chr3:17931910-17934493 FORWARD LENGTH=365
Length = 364
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 109/235 (46%), Gaps = 37/235 (15%)
Query: 106 IADYDSYWSCSVSRLGYSGTAVISR--VKPISVQYGIG--IREHDHEGRVITLEFDGFYL 161
+Y +WS + S+ Y+GTA++ + KP V + + +H+ +GRVI EF+ F L
Sbjct: 121 FGNYGVWWSLADSK--YAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRL 178
Query: 162 VNAYVPNSG-RFLRRLNYRVNNWDPCFSNYVKILEKS--KPVIVAGDLNCARQSIDIHN- 217
+N Y PN+G + R WD V+ L K+ KP+I GDLN + + ID+ +
Sbjct: 179 LNTYSPNNGWKDEENAFQRRRKWD---KRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHP 235
Query: 218 ------------PPAKTKSA--GFTIEERESFETNFSSKGLVDTFR---KQHPNAVGYTF 260
PP K GFT ER F LVD +R K+ G+++
Sbjct: 236 EFFATAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSW 295
Query: 261 WGEN-QRITNKGWRLDYFLASESITD-----KVHDSYI-LPDVSFSDHSPIGLVL 308
G + K R+DYFL SE + D K+H I L SDH P+ L L
Sbjct: 296 SGNPIGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFHGSDHCPVTLEL 350
>AT4G36050.2 | chr4:17052323-17055044 REVERSE LENGTH=611
Length = 610
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 118/285 (41%), Gaps = 55/285 (19%)
Query: 54 MKILSWNINGLHDVVTTKGFSARDLAQRENFDVLCLQETHLEEKDVEKFKNLIADYDSYW 113
MKI+++N+NGL V+ + S L + D++C QET L +++ + Y+S++
Sbjct: 1 MKIVTYNVNGLRQRVS-QFDSLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFF 59
Query: 114 SCSVS----RLGYSGTAVISRVK----------PISVQYGI----------GIREH---- 145
SC+ + R GYSG A RVK P++ + GI G E
Sbjct: 60 SCTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETSTVA 119
Query: 146 --------------DHEGRVITLEFDGFYLVNAYVPNS-GRFLRRLNYRVNNWDPCFSNY 190
D EGR + + F + N Y P + R+ ++ + +
Sbjct: 120 EGLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRW 179
Query: 191 VKILEKSKPVIVAGDLNCARQSID-IHNPPAKTKSAGFTIEERESFETNFSSKG--LVDT 247
+L + + V V GDLN A ++D P K+ E R+ F + +G D
Sbjct: 180 ECLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKN-----EFRKWFRSLLVERGGSFSDV 234
Query: 248 FRKQHPNAV-GYTFWGENQRIT--NKGWRLDYFLASESITDKVHD 289
FR +HP +T W + N G R+D+ L + S + D
Sbjct: 235 FRSKHPERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDED 279
>AT3G61030.1 | chr3:22585655-22590452 FORWARD LENGTH=510
Length = 509
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 131 VKPISVQYGIGIR--EHDHEGRVITLEFDGFYLVNAYVPNS----GRFLRRLNYRVNNWD 184
+KP+ V+YG G+ +HD EGR++T EFD FYL++ YVPNS + + +WD
Sbjct: 441 IKPLRVRYGTGLSGSDHDMEGRMVTAEFDSFYLISTYVPNSVDGLKGLVLLKLNAIEDWD 500
Query: 185 PCFSNYVKI 193
SN++K+
Sbjct: 501 RTLSNHIKV 509
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,593,411
Number of extensions: 333861
Number of successful extensions: 735
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 5
Length of query: 310
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 212
Effective length of database: 8,419,801
Effective search space: 1784997812
Effective search space used: 1784997812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)