Os12g0279600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exodeoxyribonuclease III xth family protein.
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Os12g0279600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exodeoxyribonuclease III xth family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.75 | 0.497 | 3.13 | -0.133 | 0.444 | 0.977 | -0.429 | -0.0876 | 0.322 | 18.2 | 30.3 | 310 | -- | -- |
| 111.74 | 0.492 | 3.13 | -0.126 | 0.44 | 0.972 | -0.441 | -- | 0.322 | 18.1 | 30.33 | 322 | -- | -- |
| 112.12 | 0.493 | 3.14 | -0.185 | 0.446 | 1.04 | -- | -0.849 | 0.318 | 18.4 | 30.37 | 322 | -- | -- |
| 112.14 | 0.493 | 3.13 | -0.116 | 0.449 | 0.942 | -- | -- | 0.32 | 18.4 | 30.3 | 322 | -- | -- |
| 118.18 | 0.506 | 3.14 | -0.218 | -- | 1.25 | -- | -0.657 | 0.261 | -- | 29.8 | 370 | -- | -- |
| 131.42 | 0.537 | 3.16 | 0.00611 | 0.734 | -- | 0.216 | -- | 0.245 | 18.1 | -- | -- | -- | -- |
| 131.53 | 0.537 | 3.15 | 0.00415 | 0.735 | -- | -- | -- | 0.246 | 18.1 | -- | -- | -- | -- |
| 118.34 | 0.507 | 3.14 | -0.186 | -- | 1.14 | -- | -- | 0.228 | -- | 29.5 | 370 | -- | -- |
| 112.51 | 0.494 | 3.13 | -- | 0.455 | 0.923 | -- | -- | 0.33 | 18.3 | 30.34 | 322 | -- | -- |
| 159.54 | 0.59 | 3.14 | -0.0168 | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
| 131.53 | 0.536 | 3.15 | -- | 0.735 | -- | -- | -- | 0.246 | 18.1 | -- | -- | -- | -- |
| 119.12 | 0.508 | 3.14 | -- | -- | 1.1 | -- | -- | 0.243 | -- | 29.51 | 370 | -- | -- |
| 159.55 | 0.59 | 3.14 | -- | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.53 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 16 |
| 2 | 111.99 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 3 | 112.09 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 23 |
| 4 | 112.35 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 6 | 112.40 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 23 |
| 7 | 112.45 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 8 |
| 8 | 112.50 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 9 | 112.50 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 11 |
| 115 | 112.55 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 23 |
| 135 | 112.72 | temperature | 30 | 270 | > th | dose independent | sin | 22 | NA |
| 136 | 112.75 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 141 | 112.83 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 146 | 113.00 | temperature | 30 | 720 | > th | dose independent | sin | 8 | NA |
| 149 | 113.10 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 152 | 113.15 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 202 | 113.29 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 2 |
| 204 | 113.31 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 233 | 113.47 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 235 | 113.48 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 237 | 113.50 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 23 |
| 242 | 113.52 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 12 |
| 244 | 113.52 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 23 |
| 294 | 113.73 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 14 |
| 301 | 113.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 303 | 113.83 | temperature | 25 | 270 | > th | dose dependent | sin | 21 | NA |
| 307 | 113.85 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 312 | 113.88 | temperature | 30 | 720 | > th | dose dependent | sin | 8 | NA |
| 328 | 113.92 | temperature | 10 | 270 | > th | dose dependent | sin | 21 | NA |
| 329 | 113.92 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 344 | 113.93 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 364 | 113.96 | temperature | 30 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 380 | 113.97 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 443 | 114.13 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 635 | 114.79 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 14 |
| 830 | 115.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 8 |