BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0801000 Os01g0801000|AK101426
(499 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41460.1 | chr2:17285731-17288769 FORWARD LENGTH=537 509 e-144
AT3G60950.1 | chr3:22524475-22529770 FORWARD LENGTH=628 115 7e-26
AT3G48425.1 | chr3:17931910-17934493 FORWARD LENGTH=365 92 6e-19
AT4G36050.2 | chr4:17052323-17055044 REVERSE LENGTH=611 77 2e-14
AT3G61030.1 | chr3:22585655-22590452 FORWARD LENGTH=510 66 5e-11
>AT2G41460.1 | chr2:17285731-17288769 FORWARD LENGTH=537
Length = 536
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/460 (54%), Positives = 311/460 (67%), Gaps = 45/460 (9%)
Query: 76 EIEQLRNDPDRLQSMTVKELREITRMMGIPVKGNKKDLVSAL---MDSLGKVGTSSVEKI 132
E+ L++D +++MTV+ELR R +G+PVKG K++L+S L MDS
Sbjct: 86 EMGTLQDDRKEIEAMTVQELRSTLRKLGVPVKGRKQELISTLRLHMDS---------NLP 136
Query: 133 GVSEVPSKRKGASVVVEQNIDSSEVISETPSKRSRAKN--------KGTAEESSGANXXX 184
E S + SV +++ I + E +E S A + K + E++ A
Sbjct: 137 DQKETSSSTRSDSVTIKRKISNREEPTEDECTNSEAYDIEHGEKRVKQSTEKNLKAKVSA 196
Query: 185 XXXXXXXXXXXXXG-------------------------ASVDHEEPWTVLVHKKPQPAW 219
G +S EPWTVL HKKPQ W
Sbjct: 197 KAIAKEQKSLMRTGKQQIQSKEETSSTISSELLKTEEIISSPSQSEPWTVLAHKKPQKDW 256
Query: 220 IPYNPKVMRSPSLSKDTKALKILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKM 279
YNPK MR P L + TK +K+++WNVNGL+ LLK FS QLAQRE+FDILCLQETK+
Sbjct: 257 KAYNPKTMRPPPLPEGTKCVKVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKL 316
Query: 280 QEKDVEVIKEGLLEGYTHSFWTCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVV 339
Q KDVE IK+ L++GY HSFW+CSVSKLGYSGTAIISR+KPLS++YG G+ HDTEGR+V
Sbjct: 317 QVKDVEEIKKTLIDGYDHSFWSCSVSKLGYSGTAIISRIKPLSVRYGTGLSGHDTEGRIV 376
Query: 340 TVEFNDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKDLEKSKPVILTGDLNCAHQE 399
T EF+ FYL+ YVPNSGDGLKRL+YR+ EWD +L N++K+LEKSKPV+LTGDLNCAH+E
Sbjct: 377 TAEFDSFYLINTYVPNSGDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEE 436
Query: 400 IDIHDPAGNRRSAGFTIEERESFETNFLSKGFVDTFRKQHPNVVGYSYWGYRHNARKTNK 459
IDI +PAGN+RSAGFTIEER+SF N L KGFVDTFRKQHP VVGY+YWGYRH RKTNK
Sbjct: 437 IDIFNPAGNKRSAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVGYTYWGYRHGGRKTNK 496
Query: 460 GWRLDYFLVSESIAERVHDSYIIPDISASDHSPLGLVLKL 499
GWRLDYFLVS+SIA VHDSYI+PDI+ SDH P+GL+LKL
Sbjct: 497 GWRLDYFLVSQSIAANVHDSYILPDINGSDHCPIGLILKL 536
>AT3G60950.1 | chr3:22524475-22529770 FORWARD LENGTH=628
Length = 627
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 73/95 (76%), Gaps = 6/95 (6%)
Query: 318 VKPLSIKYGLGVP--DHDTEGRVVTVEFNDFYLLTAYVPNSGDGLKRLTYR----VTEWD 371
+KPL ++YG G+ DHD EGR+VT EF+ FYL++ YVPNS DGLK L + +WD
Sbjct: 502 IKPLRVRYGTGLSGSDHDMEGRMVTAEFDSFYLISTYVPNSVDGLKGLVLLKLNAIEDWD 561
Query: 372 PSLGNYMKDLEKSKPVILTGDLNCAHQEIDIHDPA 406
+L N++KDLEKSKPV+LTGDLNCAH+EIDI +PA
Sbjct: 562 RTLSNHIKDLEKSKPVVLTGDLNCAHEEIDIFNPA 596
>AT3G48425.1 | chr3:17931910-17934493 FORWARD LENGTH=365
Length = 364
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 132/311 (42%), Gaps = 57/311 (18%)
Query: 240 KILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQ--------------EKDVE 285
K ++WN N +K+ + D D++ +QE +M D +
Sbjct: 44 KFMTWNANSFLLRVKNDWSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTK 103
Query: 286 VIKE--GLLE--------GYTHSFWTCSVSKLGYSGTAIISR--VKPLSIKYGLG--VPD 331
V++E +L G +W+ + SK Y+GTA++ + KP + + L
Sbjct: 104 VLREEKQILTRALSSPPFGNYGVWWSLADSK--YAGTALLVKKCFKPRKVYFNLDKLASK 161
Query: 332 HDTEGRVVTVEFNDFYLLTAYVPNSGDGLKRLTY-RVTEWDPSLGNYMKDLEKSKPVILT 390
H+ +GRV+ EF F LL Y PN+G + + R +WD + ++ KP+I
Sbjct: 162 HEPDGRVILAEFETFRLLNTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTS-DKPLIWC 220
Query: 391 GDLNCAHQEIDIHDP------------AGNRRSA---GFTIEERESFETNFLSKGFVDTF 435
GDLN +H+EID+ P N+ GFT ER F VD +
Sbjct: 221 GDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAY 280
Query: 436 R---KQHPNVVGYSYWGYRHNARKTNKGWRLDYFLVSESIAERV-----HDSYI-IPDIS 486
R K+ G+S W + K R+DYFLVSE + +R+ H I +
Sbjct: 281 RYLHKEQEMESGFS-WSGNPIGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGFH 339
Query: 487 ASDHSPLGLVL 497
SDH P+ L L
Sbjct: 340 GSDHCPVTLEL 350
>AT4G36050.2 | chr4:17052323-17055044 REVERSE LENGTH=611
Length = 610
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 59/289 (20%)
Query: 239 LKILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHS 298
+KI+++NVNGL+ + S+ S+ +L D DI+C QETK++ +++ + +GY S
Sbjct: 1 MKIVTYNVNGLRQRV-SQFDSLLKLLDSFDADIICFQETKLRRQEL-TADLAIADGY-ES 57
Query: 299 FWTCSVS----KLGYSGTAIISRVK----------PLSIKYGL-GVPDH----------- 332
F++C+ + + GYSG A RVK P++ + G+ G+ +
Sbjct: 58 FFSCTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETST 117
Query: 333 ----------------DTEGRVVTVEFNDFYLLTAYVPNS-GDGLKRLTYRVTEWDPSLG 375
D EGR V + F + Y P + D R+ ++ +
Sbjct: 118 VAEGLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLER 177
Query: 376 NYMKDLEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEE---RESFETNFLSKG-- 430
+ L + + V + GDLN A +D R AG E+ R+ F + + +G
Sbjct: 178 RWECLLRQGRRVFVVGDLNIAPFAMD-------RCEAGPDFEKNEFRKWFRSLLVERGGS 230
Query: 431 FVDTFRKQHPNVV-GYSYWGYRHNARKTNKGWRLDYFLVSESIAERVHD 478
F D FR +HP ++ W A + N G R+D+ LV+ S + D
Sbjct: 231 FSDVFRSKHPERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDED 279
>AT3G61030.1 | chr3:22585655-22590452 FORWARD LENGTH=510
Length = 509
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 19/133 (14%)
Query: 253 LKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHSFWTCSVSKLGYSGT 312
LK G ++ + R++ + + +QE K I+ L Y+ F C V
Sbjct: 389 LKIVGAAMGSDSDRDEIEAMTVQELKSH------IEASL---YSFRFSCCFV----IVSV 435
Query: 313 AIISRVKPLSIKYGLGVP--DHDTEGRVVTVEFNDFYLLTAYVPNSGDGLKRLTYR---- 366
I +KPL ++YG G+ DHD EGR+VT EF+ FYL++ YVPNS DGLK L
Sbjct: 436 DIQILIKPLRVRYGTGLSGSDHDMEGRMVTAEFDSFYLISTYVPNSVDGLKGLVLLKLNA 495
Query: 367 VTEWDPSLGNYMK 379
+ +WD +L N++K
Sbjct: 496 IEDWDRTLSNHIK 508
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,804,595
Number of extensions: 463015
Number of successful extensions: 1278
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1273
Number of HSP's successfully gapped: 5
Length of query: 499
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 396
Effective length of database: 8,282,721
Effective search space: 3279957516
Effective search space used: 3279957516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)