BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0793800 Os01g0793800|AK111091
         (112 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0793800  Conserved hypothetical protein                      176   3e-45
Os01g0794100  Conserved hypothetical protein                       80   4e-16
Os01g0793900  Conserved hypothetical protein                       66   4e-12

>Os01g0793800 Conserved hypothetical protein
          Length = 112

 Score =  176 bits (446), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 89/112 (79%)

Query: 1   MGNCGASQRAVXXXXXXXXXXXXXXXXXXXXXXXHRERMEHVAEVTIRITKRQLHELMER 60
           MGNCGASQRAV                       HRERMEHVAEVTIRITKRQLHELMER
Sbjct: 1   MGNCGASQRAVESWADGDEWEDEAAASSSSEDDGHRERMEHVAEVTIRITKRQLHELMER 60

Query: 61  KGAGNGHGKISRRSTQQLLADIMNSGEVHHHDQHREAHWKPALQSIPEAVES 112
           KGAGNGHGKISRRSTQQLLADIMNSGEVHHHDQHREAHWKPALQSIPEAVES
Sbjct: 61  KGAGNGHGKISRRSTQQLLADIMNSGEVHHHDQHREAHWKPALQSIPEAVES 112



>Os01g0794100 Conserved hypothetical protein
          Length = 114

 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 56/75 (74%), Gaps = 7/75 (9%)

Query: 41  HVAEVTIRITKRQLHELMERKGAGNGHG------KISRRSTQQLLADIMNSGEVHHHDQH 94
           H+ EVTIRITKRQL EL++++ A  G G      + SRRS  +LLADIMN+GEV+H   +
Sbjct: 37  HMTEVTIRITKRQLQELVDKRAAAAGGGHGYHVYRKSRRSAAELLADIMNAGEVYHQ-HY 95

Query: 95  REAHWKPALQSIPEA 109
           R AHWKPALQSIPEA
Sbjct: 96  RVAHWKPALQSIPEA 110



>Os01g0793900 Conserved hypothetical protein
          Length = 106

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 10/114 (8%)

Query: 1   MGNCGASQRAVXXXXXXXXXXXXXXXXXXXX--XXXHRERMEHVAEVTIRITKRQLHELM 58
           MGNC  SQRA                            E+ME V EV IR+T+RQL EL+
Sbjct: 1   MGNCFKSQRAAASWADDGEWEDEEEQQQQQHLHEMAAVEKMERV-EVKIRVTRRQLQELL 59

Query: 59  ERKGAGNGHGKISRRSTQQLLADIMNSGEVHHHDQHREAHWKPALQSIPEAVES 112
           E K AG G G    R  +++LA++++SG+V +  +   A W+P+LQSIPEA ES
Sbjct: 60  E-KAAGEGKG----RPVEKVLAEMISSGKVCYEQEA--AGWRPSLQSIPEADES 106



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.128    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,041,858
Number of extensions: 101769
Number of successful extensions: 398
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 3
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)