Os01g0793800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0793800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 386.76 | 0.924 | 4.92 | 1.68 | 1.49 | -3.1 | -2.12 | 0.372 | 1.04 | 16 | 20.45 | 5604 | 0.667 | 8.07 |
| 385.16 | 0.914 | 4.94 | 1.51 | 1.62 | -3.12 | -1.97 | -- | 0.985 | 15.8 | 20.51 | 5442 | 1.02 | 7.55 |
| 396.09 | 0.927 | 4.93 | 1.65 | 1.58 | -3.14 | -- | 0.451 | 1.02 | 15.6 | 20.45 | 5445 | 0.765 | 7.72 |
| 396 | 0.927 | 4.95 | 1.5 | 1.61 | -3.12 | -- | -- | 0.966 | 15.6 | 20.37 | 5438 | 0.885 | 7.58 |
| 495.27 | 1.04 | 4.9 | 1.83 | -- | -2.95 | -- | 1.13 | 1.09 | -- | 20.6 | 7500 | 0.0167 | 7.81 |
| 752.61 | 1.29 | 5.16 | 0.158 | 1.47 | -- | -1.93 | -- | 0.00244 | 15.8 | -- | -- | -- | -- |
| 763.22 | 1.29 | 5.17 | 0.131 | 1.45 | -- | -- | -- | -0.00884 | 15.6 | -- | -- | -- | -- |
| 488.23 | 1.03 | 4.96 | 1.53 | -- | -3.19 | -- | -- | 1.05 | -- | 20.5 | 6036 | 0.41 | 7.23 |
| 440.5 | 0.978 | 4.95 | -- | 1.5 | -2.74 | -- | -- | 0.798 | 15.3 | 21.19 | 5435 | 0.517 | 7.3 |
| 880.74 | 1.39 | 5.16 | 0.0695 | -- | -- | -- | -- | -0.0474 | -- | -- | -- | -- | -- |
| 763.67 | 1.29 | 5.17 | -- | 1.45 | -- | -- | -- | -0.0234 | 15.6 | -- | -- | -- | -- |
| 524.52 | 1.07 | 5.01 | -- | -- | -2.7 | -- | -- | 0.64 | -- | 21.56 | 6080 | 0.00802 | 7.35 |
| 880.87 | 1.39 | 5.17 | -- | -- | -- | -- | -- | -0.0551 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 415.31 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 3 | 416.74 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 4 | 416.75 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 5 | 416.90 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 8 |
| 11 | 417.34 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 12 | 417.47 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 17 | 417.66 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 4 |
| 19 | 417.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 83 | 420.61 | temperature | 20 | 4320 | > th | dose dependent | sin | 9 | NA |
| 196 | 423.97 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 252 | 425.20 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 327 | 426.55 | temperature | 25 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 328 | 426.57 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 416 | 427.73 | temperature | 25 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 441 | 428.05 | temperature | 25 | 14400 | > th | dose dependent | sin | 17 | NA |
| 447 | 428.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 19 |
| 462 | 428.21 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 14 |
| 467 | 428.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 536 | 428.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 539 | 428.72 | temperature | 25 | 14400 | < th | dose independent | sin | 14 | NA |
| 565 | 428.82 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 671 | 429.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 22 |
| 719 | 429.37 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 721 | 429.37 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 734 | 429.43 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 779 | 429.63 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 803 | 429.76 | temperature | 20 | 43200 | > th | dose independent | sin | 17 | NA |
| 957 | 430.71 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 975 | 430.84 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 1 |