BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0784600 Os01g0784600|AK067527
         (346 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0784600  Conserved hypothetical protein                      667   0.0  
Os03g0394900  Conserved hypothetical protein                      329   1e-90
Os03g0363950  Conserved hypothetical protein                      327   1e-89
Os07g0644200  Similar to NodH (Fragment)                          325   3e-89

>Os01g0784600 Conserved hypothetical protein
          Length = 346

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/321 (100%), Positives = 321/321 (100%)

Query: 1   MEEAGREKDRSVVVVVEDLGTATKDTVNPSAKSTRRYPLLSWTTILALIALVGVYIFSVS 60
           MEEAGREKDRSVVVVVEDLGTATKDTVNPSAKSTRRYPLLSWTTILALIALVGVYIFSVS
Sbjct: 1   MEEAGREKDRSVVVVVEDLGTATKDTVNPSAKSTRRYPLLSWTTILALIALVGVYIFSVS 60

Query: 61  LKQNGMLLGLKQTDMIEKEREKLCQDPSIPVTEIPYVHYPTPDTYSRKECACTPVRFFAI 120
           LKQNGMLLGLKQTDMIEKEREKLCQDPSIPVTEIPYVHYPTPDTYSRKECACTPVRFFAI
Sbjct: 61  LKQNGMLLGLKQTDMIEKEREKLCQDPSIPVTEIPYVHYPTPDTYSRKECACTPVRFFAI 120

Query: 121 LSMQRSGSGWIETLLNSHENISSNGEIFSIKERRSNITSITKTLDKLYNLDWLSSAAKNE 180
           LSMQRSGSGWIETLLNSHENISSNGEIFSIKERRSNITSITKTLDKLYNLDWLSSAAKNE
Sbjct: 121 LSMQRSGSGWIETLLNSHENISSNGEIFSIKERRSNITSITKTLDKLYNLDWLSSAAKNE 180

Query: 181 CTAAVGLKWMLNQGLVQHHEEVVEYFNRRGVSAIFLLRRNTLQRYVSVLANAHDSKAKQI 240
           CTAAVGLKWMLNQGLVQHHEEVVEYFNRRGVSAIFLLRRNTLQRYVSVLANAHDSKAKQI
Sbjct: 181 CTAAVGLKWMLNQGLVQHHEEVVEYFNRRGVSAIFLLRRNTLQRYVSVLANAHDSKAKQI 240

Query: 241 NGTHKSHVHSEREAQILAQFKPEIDTKKLIADLKKSDKLAADALLYFKKTRHIILYYEDV 300
           NGTHKSHVHSEREAQILAQFKPEIDTKKLIADLKKSDKLAADALLYFKKTRHIILYYEDV
Sbjct: 241 NGTHKSHVHSEREAQILAQFKPEIDTKKLIADLKKSDKLAADALLYFKKTRHIILYYEDV 300

Query: 301 VSNDTVSPIALYILVRRLNEH 321
           VSNDTVSPIALYILVRRLNEH
Sbjct: 301 VSNDTVSPIALYILVRRLNEH 321



>Os03g0394900 Conserved hypothetical protein
          Length = 362

 Score =  329 bits (844), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 162/276 (58%), Positives = 200/276 (72%), Gaps = 6/276 (2%)

Query: 32  KSTRRYPLLSWTTILALIALVGVYIFSVSLKQNGMLLGLKQTDMIEKER--EKLCQDPSI 89
           KS+++ PL     + A+  + G++I ++ +KQ    LG      I K    E+LC   +I
Sbjct: 34  KSSKKSPLALRMVVFAMTMICGIFICTMCMKQ----LGSDSLSRIVKIEVAEQLCNKSAI 89

Query: 90  PVTEIPYVHYPTPDTYSRKECACTPVRFFAILSMQRSGSGWIETLLNSHENISSNGEIFS 149
             +E+ +VHYP P TYSR EC CTPVRFFAI+S QRSGSGW ETLLNSH N+SSNGEIFS
Sbjct: 90  LHSEVHFVHYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLLNSHMNVSSNGEIFS 149

Query: 150 IKERRSNITSITKTLDKLYNLDWLSSAAKNECTAAVGLKWMLNQGLVQHHEEVVEYFNRR 209
            KERRSNI+SITKTLDK+YNLDW SSA+KNECTAAVGLKWMLNQGLV +H ++ +YFNRR
Sbjct: 150 SKERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGLVANHADIADYFNRR 209

Query: 210 GVSAIFLLRRNTLQRYVSVLANAHDSKAKQINGTHKSHVHSEREAQILAQFKPEIDTKKL 269
           GVSAIFL R N L++ VS LAN HD   KQ+NGTHK+HVH+  EA ILA++KP ++T  L
Sbjct: 210 GVSAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEASILARYKPRLNTTSL 269

Query: 270 IADLKKSDKLAADALLYFKKTRHIILYYEDVVSNDT 305
           I  LK+ D    DAL   K   HI +YYED++ N T
Sbjct: 270 IRSLKQVDDYTRDALENLKSINHITIYYEDLIRNRT 305



>Os03g0363950 Conserved hypothetical protein
          Length = 366

 Score =  327 bits (837), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 158/282 (56%), Positives = 206/282 (73%), Gaps = 10/282 (3%)

Query: 28  NPS--AKSTRRYPLLSWTTILA-LIALVGVYIFSVSLKQNGMLLGLKQTDMI---EKERE 81
           NPS  A  + + PL    +IL  LIAL G Y+   S  Q    + L+  + +   E++  
Sbjct: 29  NPSVYALKSPKGPLFPLRSILVFLIALFGFYVCYFSFNQ----IDLENKENLISGEEQIR 84

Query: 82  KLCQDPSIPVTEIPYVHYPTPDTYSRKECACTPVRFFAILSMQRSGSGWIETLLNSHENI 141
            LC+  +IP   + YVH+P P +YSR ECACTPVRFF I+SMQRSGSGW ETLLNSH N+
Sbjct: 85  TLCRRHTIPNELMQYVHFPKPTSYSRGECACTPVRFFVIISMQRSGSGWFETLLNSHPNV 144

Query: 142 SSNGEIFSIKERRSNITSITKTLDKLYNLDWLSSAAKNECTAAVGLKWMLNQGLVQHHEE 201
           SSNGEIFSI+ERR +I+SI +TLDKLYNLDW +SAAKNECTAA GLKWMLNQG+++H+ +
Sbjct: 145 SSNGEIFSIRERREDISSILRTLDKLYNLDWHTSAAKNECTAAFGLKWMLNQGIMEHYHD 204

Query: 202 VVEYFNRRGVSAIFLLRRNTLQRYVSVLANAHDSKAKQINGTHKSHVHSEREAQILAQFK 261
           +V Y N++GV  IFL RRNTL+R +SVLAN +D K KQ+NGTHK+HVHS  EA ILA+FK
Sbjct: 205 IVNYLNKKGVMVIFLFRRNTLRRIISVLANDYDRKTKQLNGTHKAHVHSREEADILARFK 264

Query: 262 PEIDTKKLIADLKKSDKLAADALLYFKKTRHIILYYEDVVSN 303
           P++D   LI +++ +++     L +F  TRH+ILYYEDV+ +
Sbjct: 265 PKLDVPTLIPNIRSAEQSITTCLDHFSSTRHMILYYEDVIRD 306



>Os07g0644200 Similar to NodH (Fragment)
          Length = 337

 Score =  325 bits (834), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 153/274 (55%), Positives = 199/274 (72%), Gaps = 1/274 (0%)

Query: 30  SAKSTRRYPLLSWTTILALIALVGVYIFSVSLKQNGMLLGLKQTDMIEKEREKLCQDPSI 89
           S KS++  P      ++ LIA+ G Y+  +S  Q   L    + +  E + E  C+ P +
Sbjct: 5   SLKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQ-ITLENRSEENSGEVQAEIHCRKPHL 63

Query: 90  PVTEIPYVHYPTPDTYSRKECACTPVRFFAILSMQRSGSGWIETLLNSHENISSNGEIFS 149
           P  E+ YVH+P P++YSR EC+C  VR F ++SMQRSGSGW ETLLNSH NISSNGEIF+
Sbjct: 64  PHEELRYVHFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGEIFN 123

Query: 150 IKERRSNITSITKTLDKLYNLDWLSSAAKNECTAAVGLKWMLNQGLVQHHEEVVEYFNRR 209
             +RR NI+SI +TLDKLYNLDW +SAAKNECTAA GLKWMLNQG + HH+++  Y N++
Sbjct: 124 RVDRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYLNKK 183

Query: 210 GVSAIFLLRRNTLQRYVSVLANAHDSKAKQINGTHKSHVHSEREAQILAQFKPEIDTKKL 269
           GVS IFL RRNTL+R +SVLAN +D  AKQ+NGTHKSHVHS+ EA+ILA+FKP +D   L
Sbjct: 184 GVSVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDVSNL 243

Query: 270 IADLKKSDKLAADALLYFKKTRHIILYYEDVVSN 303
           I +++ ++K   D L +F  TRH+ILYYED+V N
Sbjct: 244 IPNIRNAEKYIRDCLDHFNTTRHMILYYEDIVRN 277



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,813,029
Number of extensions: 374505
Number of successful extensions: 1007
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1005
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)