BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0783500 Os01g0783500|AK072280
(262 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0783500 Universal stress protein (Usp) family protein 411 e-115
Os05g0501700 Universal stress protein (Usp) family protein 293 8e-80
Os07g0551400 Universal stress protein (Usp) family protein 238 4e-63
Os05g0157200 Universal stress protein (Usp) family protein 65 4e-11
>Os01g0783500 Universal stress protein (Usp) family protein
Length = 262
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/241 (85%), Positives = 207/241 (85%)
Query: 22 TLPPVRLXXXXXXXXXXIHPTSPRYFFSSLAGTNASPHRRIAIAVDLSDESAYAVRWAVQ 81
TLPPVRL IHPTSPRYFFSSLAGTNASPHRRIAIAVDLSDESAYAVRWAVQ
Sbjct: 22 TLPPVRLAAAQAASAAAIHPTSPRYFFSSLAGTNASPHRRIAIAVDLSDESAYAVRWAVQ 81
Query: 82 NYLRPGDAVVLLHVRPTSVLYGADWGSIPVSVSDDADGEVAPAASAEELQKKREEDFDAF 141
NYLRPGDAVVLLHVRPTSVLYGADWGSIPVSVSDDADGEVAPAASAEELQKKREEDFDAF
Sbjct: 82 NYLRPGDAVVLLHVRPTSVLYGADWGSIPVSVSDDADGEVAPAASAEELQKKREEDFDAF 141
Query: 142 TSTKAEDLAQPLVDAQIPFKIHVVKDHDMKERLCLEAERLGLSAMIMGSRGFGASRKGGK 201
TSTKAEDLAQPLVDAQIPFKIHVVKDHDMKERLCLEAERLGLSAMIMGSRGFGASRKGGK
Sbjct: 142 TSTKAEDLAQPLVDAQIPFKIHVVKDHDMKERLCLEAERLGLSAMIMGSRGFGASRKGGK 201
Query: 202 GRLGSVSDYXXXXXXXXXXXXRYPXXXXXXXXXXXXPTDELHTVPEDEPVYHDAPDVQKE 261
GRLGSVSDY RYP PTDELHTVPEDEPVYHDAPDVQKE
Sbjct: 202 GRLGSVSDYCVHHCVCPVVVVRYPDDAAGADGEAAGPTDELHTVPEDEPVYHDAPDVQKE 261
Query: 262 N 262
N
Sbjct: 262 N 262
>Os05g0501700 Universal stress protein (Usp) family protein
Length = 268
Score = 293 bits (750), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 173/253 (68%), Positives = 185/253 (73%), Gaps = 16/253 (6%)
Query: 22 TLPPVRLXXXXXXXXXXIHPTSPRYFFSSLAGTNAS---PHRRIAIAVDLSDESAYAVRW 78
T PPVRL I P SPR+FFSSLA +AS PHRRIAIAVDLSDESA+AV+W
Sbjct: 20 TPPPVRLAGGAAAA---IQPNSPRFFFSSLAAASASASSPHRRIAIAVDLSDESAFAVKW 76
Query: 79 AVQNYLRPGDAVVLLHVRPTSVLYGADWGSIPVSVSDDADGEVAPAASA---------EE 129
+VQNYLRPGDAVVLLHVRPTSVLYGADWGSIPVSV DD A + EE
Sbjct: 77 SVQNYLRPGDAVVLLHVRPTSVLYGADWGSIPVSVDDDDSAPDAAQHANAHAATRDEPEE 136
Query: 130 LQKKREEDFDAFTSTKAEDLAQPLVDAQIPFKIHVVKDHDMKERLCLEAERLGLSAMIMG 189
+KKREEDFDAFTSTKA+DLAQPLV AQIPFKIH+VKDHDMKERLCLEAERLGLSAMIMG
Sbjct: 137 AKKKREEDFDAFTSTKAQDLAQPLVAAQIPFKIHIVKDHDMKERLCLEAERLGLSAMIMG 196
Query: 190 SRGFGASRKGGKGRLGSVSDYXXXXXXXXXXXXRYPXXXXXXXXXXXXPTDELHTVPEDE 249
SRGFGASR+ GKGRLGSVSDY RYP DEL TVPEDE
Sbjct: 197 SRGFGASRRAGKGRLGSVSDYCVHHCVCPVVVVRYPDDGAAAGGGEAV-GDELRTVPEDE 255
Query: 250 PVYHDAPDVQKEN 262
PVYH+AP+ QKEN
Sbjct: 256 PVYHEAPEGQKEN 268
>Os07g0551400 Universal stress protein (Usp) family protein
Length = 268
Score = 238 bits (607), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 132/236 (55%), Positives = 159/236 (67%), Gaps = 12/236 (5%)
Query: 39 IHPTSPRYFFSSLAGTN--ASPHRRIAIAVDLSDESAYAVRWAVQNYLRPGDAVVLLHVR 96
+ P SP FF++ A S HRRIAIAVDLSDESAYAVRWAV NYLRPGDAV+LLHVR
Sbjct: 33 LQPESPGVFFTAAAAAAPVGSSHRRIAIAVDLSDESAYAVRWAVANYLRPGDAVILLHVR 92
Query: 97 PTSVLYGADWGSI----PVSVSDDADGEVAPAASAEELQKKREEDFDAFTSTKAEDLAQP 152
PTSVLYGADWGS+ P + + + + AE +K E+DFDAFT++KA+DLA+P
Sbjct: 93 PTSVLYGADWGSVDLSLPAANPNPSGDPPSAEDDAEAAARKMEDDFDAFTASKADDLAKP 152
Query: 153 LVDAQIPFKIHVVKDHDMKERLCLEAERLGLSAMIMGSRGFGASRKGGKGRLGSVSDYXX 212
L DA IP+KIH+VKDHDMKERLCLE ERLGLSA+IMGS+GFGASR+ KGRLGSVSDY
Sbjct: 153 LKDAGIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSVSDYCV 212
Query: 213 XXXXXXXXXXRYPXXXXXXXXXXXXPT------DELHTVPEDEPVYHDAPDVQKEN 262
R+P + + LH VPE++ YHDA + K+
Sbjct: 213 HHCVCPVVVVRFPDDGVAEGGEAGGASELAVGEEVLHPVPEEDAEYHDATEEHKDT 268
>Os05g0157200 Universal stress protein (Usp) family protein
Length = 167
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 24/167 (14%)
Query: 51 LAGTNASPHRRIAIAVDLSDESAYAVRWAVQNYLRPGDAVVLLHV-------RPTSVLYG 103
+AG A+ R + AVD S+ S A+RWA N LR GD ++LLHV + ++L+
Sbjct: 1 MAGEAAAAERWVGAAVDFSEGSRAALRWAADNLLRAGDHLILLHVLKDPDYEQGETLLWE 60
Query: 104 ADWGSIPVSVSDDADGEVAPAASAEELQKKREEDFDAFTSTKAEDLAQPLVDAQIPFKIH 163
A GS + +SD ++ +A A K E D + + + + FK+
Sbjct: 61 AT-GSPLIPLSDFSEPTIAKKYGA----KPDAETLDMLNTVARQK------EVVVVFKVL 109
Query: 164 VVKDHDMKERLCLEAERLGLSAMIMGSRGFGASRKGGKGRLGSVSDY 210
D +E+LC + +S +++GSRG G K + LGSVSDY
Sbjct: 110 W---GDPREKLCQAINEIPMSCLVIGSRGLG---KLKRVLLGSVSDY 150
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,885,532
Number of extensions: 310236
Number of successful extensions: 1159
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1155
Number of HSP's successfully gapped: 4
Length of query: 262
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 163
Effective length of database: 11,866,615
Effective search space: 1934258245
Effective search space used: 1934258245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)