Os07g0551400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Universal stress protein (Usp) family protein.
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Os07g0551400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Universal stress protein (Usp) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.56 | 0.392 | 7.46 | 1.53 | 0.139 | -1.82 | -1.85 | 4.74 | 0.277 | 1.12 | 23.75 | 1076 | -- | -- |
| 78.99 | 0.414 | 7.57 | 0.491 | 0.0671 | -1.42 | -1.99 | -- | 0.0684 | 2.85 | 22.23 | 1082 | -- | -- |
| 82.58 | 0.423 | 7.48 | 1.33 | 0.126 | -1.72 | -- | 3.73 | 0.208 | 0.887 | 23.9 | 1085 | -- | -- |
| 83.07 | 0.424 | 7.6 | 0.473 | 0.358 | -1.58 | -- | -- | 0.012 | 20.2 | 22.73 | 919 | -- | -- |
| 83.6 | 0.426 | 7.5 | 1.22 | -- | -1.64 | -- | 3.2 | 0.187 | -- | 23.86 | 1101 | -- | -- |
| 133.59 | 0.542 | 7.64 | -0.027 | 0.206 | -- | 1.76 | -- | -0.249 | 14 | -- | -- | -- | -- |
| 145.43 | 0.565 | 7.64 | 0.0259 | 0.209 | -- | -- | -- | -0.238 | 14.2 | -- | -- | -- | -- |
| 86.93 | 0.434 | 7.58 | 0.447 | -- | -1.38 | -- | -- | 0.017 | -- | 22.69 | 1071 | -- | -- |
| 88.3 | 0.438 | 7.6 | -- | 0.345 | -1.46 | -- | -- | -0.0457 | 20.1 | 22.89 | 918 | -- | -- |
| 148.04 | 0.569 | 7.64 | 0.0171 | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
| 145.45 | 0.564 | 7.64 | -- | 0.209 | -- | -- | -- | -0.241 | 14.2 | -- | -- | -- | -- |
| 91.74 | 0.446 | 7.6 | -- | -- | -1.28 | -- | -- | -0.0553 | -- | 22.8 | 1058 | -- | -- |
| 148.05 | 0.568 | 7.64 | -- | -- | -- | -- | -- | -0.245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.23 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 17 |
| 5 | 63.31 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 15 | 64.91 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 33 | 68.08 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 45 | 69.14 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 15 |
| 46 | 69.17 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 10 |
| 50 | 69.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 53 | 69.42 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 82 | 70.84 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 85 | 70.89 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 88 | 71.05 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 11 |
| 101 | 71.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 107 | 71.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 113 | 71.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 136 | 72.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 159 | 72.77 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 186 | 73.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 10 |
| 241 | 74.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 277 | 74.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 285 | 74.84 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 17 |
| 315 | 75.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 350 | 75.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 17 |
| 373 | 75.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 382 | 76.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 418 | 76.44 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 11 |
| 475 | 76.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 557 | 77.27 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 21 |
| 577 | 77.44 | radiation | 1 | 720 | < th | dose independent | sin | 18 | NA |
| 588 | 77.54 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 744 | 78.54 | radiation | 1 | 720 | < th | dose dependent | sin | 18 | NA |
| 827 | 79.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 831 | 79.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 863 | 79.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 883 | 79.42 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 886 | 79.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 912 | 79.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 20 |
| 995 | 79.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 23 |