BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0551400 Os07g0551400|AK109507
(268 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243 232 2e-61
AT4G27320.1 | chr4:13678860-13680717 REVERSE LENGTH=261 204 3e-53
AT5G54430.1 | chr5:22097563-22099693 REVERSE LENGTH=243 204 5e-53
AT3G21210.1 | chr3:7438241-7440756 REVERSE LENGTH=805 131 3e-31
AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163 51 6e-07
>AT1G11360.1 | chr1:3822171-3822899 REVERSE LENGTH=243
Length = 242
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/241 (53%), Positives = 153/241 (63%), Gaps = 24/241 (9%)
Query: 32 SLQPESPGVFFTXXXXXXPVGSSHRRIAIAVDLSDESAYAVRWAVANYLRPGDAVILLHV 91
++QP SP + P + R+I IAVDLSDESAYAV+WAV NYLR GDAV+LLHV
Sbjct: 19 TVQPSSPRFPIST-----PTAGAQRKIGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHV 73
Query: 92 RPTSVLYGADWGSVDLSLPAANPNPSGDPPSXXXXXXXXXRKMEDDFDAFTASKADDLAK 151
+PTSVLYGADWG++DLS P +PN RK+EDDFD T KA D+A+
Sbjct: 74 QPTSVLYGADWGAMDLS-PQWDPN-----------NEESQRKLEDDFDIVTNKKASDVAQ 121
Query: 152 PLKDAGIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSVSDYX 211
PL +A IP+KIHIVKDHDMKERLCLEVERLGLS +IMGS+GFGA++R+SKGRLGSVSDY
Sbjct: 122 PLVEADIPFKIHIVKDHDMKERLCLEVERLGLSTLIMGSRGFGATKRSSKGRLGSVSDYS 181
Query: 212 XXXXXXXXXXXRFPDDX-XXXXXXXXXXXXXXXXXXXLHPVPE------EDAEYHDATEE 264
RFPDD LH VPE + EYHDA+++
Sbjct: 182 VHHCACPVVVVRFPDDKDGEDEKSGDSGGENLMDSDKLHTVPEVAEEEGDKDEYHDASDK 241
Query: 265 H 265
Sbjct: 242 Q 242
>AT4G27320.1 | chr4:13678860-13680717 REVERSE LENGTH=261
Length = 260
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 106/187 (56%), Positives = 127/187 (67%), Gaps = 26/187 (13%)
Query: 50 PVGSSHRRIAIAVDLSDESAYAVRWAVANYLRPGDAVILLHVRPTSVLYGADWGSVDLSL 109
P + R+I +AVDLS+ESA+AVRWAV +Y+RPGDAV++LHV PTSVL+GADWG + L
Sbjct: 39 PTAGARRKIGVAVDLSEESAFAVRWAVDHYIRPGDAVVILHVSPTSVLFGADWGPLPLQT 98
Query: 110 ---------PAANPNPSGDPPSXXXXXXXXXRKMEDDFDAFTASKADDLAKPLKDAGIPY 160
P A P PS ++DFDAFT+SK DLAKPLK+AG P+
Sbjct: 99 PPPPSAATDPGAQPKPS-----------------QEDFDAFTSSKVADLAKPLKEAGFPH 141
Query: 161 KIHIVKDHDMKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSVSDYXXXXXXXXXX 220
KIHIVKDHDM+ERLCLE ERL LSAVIMGS+GFGA +R S G+LGSVSDY
Sbjct: 142 KIHIVKDHDMRERLCLETERLNLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 201
Query: 221 XXRFPDD 227
R+PDD
Sbjct: 202 VVRYPDD 208
>AT5G54430.1 | chr5:22097563-22099693 REVERSE LENGTH=243
Length = 242
Score = 204 bits (518), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 126/175 (72%), Gaps = 14/175 (8%)
Query: 54 SHRRIAIAVDLSDESAYAVRWAVANYLRPGDAVILLHVRPTSVLYGADWGSVDLSLPAAN 113
+ R+I +AVDLS+ES++AVRWAV +Y+RPGDAV+LLHV PTSVL+GADWG + L +
Sbjct: 46 ARRKIGVAVDLSEESSFAVRWAVDHYIRPGDAVVLLHVSPTSVLFGADWGPLPLKTQIED 105
Query: 114 PNPSGDPPSXXXXXXXXXRKMEDDFDAFTASKADDLAKPLKDAGIPYKIHIVKDHDMKER 173
PN P ++DFDAFT++K DLAKPLK+ G PYKIHIVKDHDM+ER
Sbjct: 106 PNAQPQPS-------------QEDFDAFTSTKVADLAKPLKELGFPYKIHIVKDHDMRER 152
Query: 174 LCLEVERLGLSAVIMGSKGFGA-SRRTSKGRLGSVSDYXXXXXXXXXXXXRFPDD 227
LCLE+ERLGLSAVIMGS+GFGA +R S G+LGSVSDY R+PDD
Sbjct: 153 LCLEIERLGLSAVIMGSRGFGAEKKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 207
>AT3G21210.1 | chr3:7438241-7440756 REVERSE LENGTH=805
Length = 804
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 95/177 (53%), Gaps = 36/177 (20%)
Query: 50 PVGSSHRRIAIAVDLSDESAYAVRWAVANYLRPGDAVILLHVRPTSVLYGADWGSVDLSL 109
P R+I IAV+LS+ESA+ VRWAV NY+R GD +I+LHV PT+ L+GADWG L
Sbjct: 9 PSSPRQRKIGIAVELSEESAFTVRWAVDNYIRQGDDIIILHVSPTAGLFGADWGYYPL-- 66
Query: 110 PAANPNPSGDPPSXXXXXXXXXRKMEDDFDAFTASKADDLAKPLKDAGIPYKIHIVKDHD 169
PP A SK DL KPLK+AG P+ IH VKD+D
Sbjct: 67 -------QTQPPYTT---------------ASIFSKVADLGKPLKEAGFPHTIHTVKDYD 104
Query: 170 MKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSVSDYXXXXXXXXXXXXRFPD 226
+ERLCLE +RL L+A+IM GFG GSVSD+ R+PD
Sbjct: 105 KRERLCLETQRLNLTALIM---GFGD---------GSVSDFCVHHCVCQVVVVRYPD 149
>AT3G62550.1 | chr3:23136194-23137074 FORWARD LENGTH=163
Length = 162
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 24/161 (14%)
Query: 53 SSHRRIAIAVDLSDESAYAVRWAVANYLRPG--DAVILLHVRPTSVLYGADWGSVDLSLP 110
+ R+I +AVD S+ES A+ W++ N G + +ILL+V+P +Y SL
Sbjct: 4 TKERKIVVAVDESEESMEALSWSLDNLFPYGSNNTLILLYVKPPLPVYS--------SLD 55
Query: 111 AANPNPSGDPPSXXXXXXXXXRKMEDDFDAFTASKADDLAKPLK-DAGIPYKIHIVKDHD 169
AA +GDP + +K E + +++ + + + D I + V D
Sbjct: 56 AAGFIVTGDPVA-------ALKKYEYELVESVMARSRTVYQDYESDINIERR---VGRGD 105
Query: 170 MKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSVSDY 210
KE +C V++L + ++MG+ +G +R LGSVS+Y
Sbjct: 106 AKEVICNAVQKLRVDMLVMGTHDYGFFKR---ALLGSVSEY 143
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,755,411
Number of extensions: 168533
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 5
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)