BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0551400 Os07g0551400|AK109507
         (268 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0551400  Universal stress protein (Usp) family protein       373   e-104
Os01g0783500  Universal stress protein (Usp) family protein       238   3e-63
Os05g0501700  Universal stress protein (Usp) family protein       223   8e-59
Os03g0375000                                                       75   7e-14

>Os07g0551400 Universal stress protein (Usp) family protein
          Length = 268

 Score =  373 bits (957), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/268 (73%), Positives = 197/268 (73%)

Query: 1   MQNPPSHXXXXXXXXXXXXXXXXXXXXXXXXSLQPESPGVFFTXXXXXXPVGSSHRRIAI 60
           MQNPPSH                        SLQPESPGVFFT      PVGSSHRRIAI
Sbjct: 1   MQNPPSHPVDLPLAAAPPPVKAPTPRPPTPASLQPESPGVFFTAAAAAAPVGSSHRRIAI 60

Query: 61  AVDLSDESAYAVRWAVANYLRPGDAVILLHVRPTSVLYGADWGSVDLSLPAANPNPSGDP 120
           AVDLSDESAYAVRWAVANYLRPGDAVILLHVRPTSVLYGADWGSVDLSLPAANPNPSGDP
Sbjct: 61  AVDLSDESAYAVRWAVANYLRPGDAVILLHVRPTSVLYGADWGSVDLSLPAANPNPSGDP 120

Query: 121 PSXXXXXXXXXRKMEDDFDAFTASKADDLAKPLKDAGIPYKIHIVKDHDMKERLCLEVER 180
           PS         RKMEDDFDAFTASKADDLAKPLKDAGIPYKIHIVKDHDMKERLCLEVER
Sbjct: 121 PSAEDDAEAAARKMEDDFDAFTASKADDLAKPLKDAGIPYKIHIVKDHDMKERLCLEVER 180

Query: 181 LGLSAVIMGSKGFGASRRTSKGRLGSVSDYXXXXXXXXXXXXRFPDDXXXXXXXXXXXXX 240
           LGLSAVIMGSKGFGASRRTSKGRLGSVSDY            RFPDD             
Sbjct: 181 LGLSAVIMGSKGFGASRRTSKGRLGSVSDYCVHHCVCPVVVVRFPDDGVAEGGEAGGASE 240

Query: 241 XXXXXXXLHPVPEEDAEYHDATEEHKDT 268
                  LHPVPEEDAEYHDATEEHKDT
Sbjct: 241 LAVGEEVLHPVPEEDAEYHDATEEHKDT 268



>Os01g0783500 Universal stress protein (Usp) family protein
          Length = 262

 Score =  238 bits (607), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 130/236 (55%), Positives = 156/236 (66%), Gaps = 12/236 (5%)

Query: 33  LQPESPGVFFTXXXXXXPVGSSHRRIAIAVDLSDESAYAVRWAVANYLRPGDAVILLHVR 92
           + P SP  FF+         S HRRIAIAVDLSDESAYAVRWAV NYLRPGDAV+LLHVR
Sbjct: 39  IHPTSPRYFFSSLAGTN--ASPHRRIAIAVDLSDESAYAVRWAVQNYLRPGDAVVLLHVR 96

Query: 93  PTSVLYGADWGSVDLSLPAANPNPSGDPPSXXXXXXXXXRKMEDDFDAFTASKADDLAKP 152
           PTSVLYGADWGS+ +S+   + +  G+  +         +K E+DFDAFT++KA+DLA+P
Sbjct: 97  PTSVLYGADWGSIPVSV---SDDADGEV-APAASAEELQKKREEDFDAFTSTKAEDLAQP 152

Query: 153 LKDAGIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSVSDYXX 212
           L DA IP+KIH+VKDHDMKERLCLE ERLGLSA+IMGS+GFGASR+  KGRLGSVSDY  
Sbjct: 153 LVDAQIPFKIHVVKDHDMKERLCLEAERLGLSAMIMGSRGFGASRKGGKGRLGSVSDYCV 212

Query: 213 XXXXXXXXXXRFPDDXXXXXXXXXXXXXXXXXXXXLHPVPEEDAEYHDATEEHKDT 268
                     R+P                      LH VPE++  YHDA +  K+ 
Sbjct: 213 HHCVCPVVVVRYP------DDAAGADGEAAGPTDELHTVPEDEPVYHDAPDVQKEN 262



>Os05g0501700 Universal stress protein (Usp) family protein
          Length = 268

 Score =  223 bits (569), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 123/219 (56%), Positives = 145/219 (66%), Gaps = 12/219 (5%)

Query: 55  HRRIAIAVDLSDESAYAVRWAVANYLRPGDAVILLHVRPTSVLYGADWGSVDLSLPAANP 114
           HRRIAIAVDLSDESA+AV+W+V NYLRPGDAV+LLHVRPTSVLYGADWGS+ +S+   + 
Sbjct: 57  HRRIAIAVDLSDESAFAVKWSVQNYLRPGDAVVLLHVRPTSVLYGADWGSIPVSVDDDDS 116

Query: 115 NPSGDPPSXXXXXX-----XXXRKMEDDFDAFTASKADDLAKPLKDAGIPYKIHIVKDHD 169
            P     +              +K E+DFDAFT++KA DLA+PL  A IP+KIHIVKDHD
Sbjct: 117 APDAAQHANAHAATRDEPEEAKKKREEDFDAFTSTKAQDLAQPLVAAQIPFKIHIVKDHD 176

Query: 170 MKERLCLEVERLGLSAVIMGSKGFGASRRTSKGRLGSVSDYXXXXXXXXXXXXRFPDDXX 229
           MKERLCLE ERLGLSA+IMGS+GFGASRR  KGRLGSVSDY            R+PDD  
Sbjct: 177 MKERLCLEAERLGLSAMIMGSRGFGASRRAGKGRLGSVSDYCVHHCVCPVVVVRYPDD-- 234

Query: 230 XXXXXXXXXXXXXXXXXXLHPVPEEDAEYHDATEEHKDT 268
                             L  VPE++  YH+A E  K+ 
Sbjct: 235 -----GAAAGGGEAVGDELRTVPEDEPVYHEAPEGQKEN 268



>Os03g0375000 
          Length = 89

 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 37/47 (78%)

Query: 118 GDPPSXXXXXXXXXRKMEDDFDAFTASKADDLAKPLKDAGIPYKIHI 164
           G+PPS         RKMEDDF+AFT SKADDLAKPLKDAGIPYKIHI
Sbjct: 23  GNPPSAKDDAEAAARKMEDDFNAFTVSKADDLAKPLKDAGIPYKIHI 69



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,796,384
Number of extensions: 289936
Number of successful extensions: 475
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 4
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)