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Os01g0783500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Universal stress protein (Usp) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.0126) R2 : 0.7
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.93 (0.0301) R2dC : 0.631 R2C : 0.609
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.273 (0.0264) R2dN8 : 0.0909 R2N8 : 0.0696
σ : 0.237
deviance : 25.61
__
_____
C
peak time of C : 22.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.34 0.212 13.7 -0.265 0.944 -0.122 0.621 1.33 0.203 22.9 9.712 1416 -- --
22.41 0.222 13.7 -0.129 0.635 0.276 0.561 -- 0.263 22.4 9.712 1416 -- --
21.4 0.215 13.7 -0.306 0.93 -0.12 -- 1.59 0.208 22.9 29.97 1763 -- --
23.69 0.228 13.7 -0.152 0.625 0.283 -- -- 0.262 22.4 9.712 1416 -- --
38.59 0.291 13.7 -0.0924 -- 0.756 -- 0.563 0.257 -- 29.97 1763 -- --
23.71 0.228 13.7 -0.124 0.934 -- 0.562 -- 0.259 22.8 -- -- -- --
25.04 0.234 13.7 -0.147 0.932 -- -- -- 0.257 22.8 -- -- -- --
29.8 0.255 13.7 -0.162 -- 0.712 -- -- 0.265 -- 9.712 1416 -- --
24.29 0.231 13.7 -- 0.629 0.279 -- -- 0.278 22.4 9.712 1416 -- --
78.81 0.415 13.7 -0.128 -- -- -- -- 0.263 -- -- -- -- --
25.61 0.237 13.7 -- 0.93 -- -- -- 0.273 22.8 -- -- -- --
30.49 0.258 13.7 -- -- 0.709 -- -- 0.283 -- 9.712 1416 -- --
79.24 0.415 13.7 -- -- -- -- -- 0.277 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.62 humidity 80 43200 > th dose independent rect. 10 15
2 19.65 radiation 10 1440 < th dose dependent rect. 15 17
5 19.72 humidity 80 43200 > th dose independent rect. 12 12
8 19.75 humidity 80 43200 < th dose independent rect. 10 15
9 19.76 humidity 80 43200 < th dose independent rect. 11 13
12 19.79 radiation 10 1440 < th dose independent rect. 15 16
14 19.80 radiation 10 1440 < th dose dependent sin 12 NA
16 19.81 radiation 10 1440 < th dose dependent rect. 15 21
19 19.83 radiation 10 1440 < th dose independent rect. 16 1
21 19.84 temperature 20 720 > th dose independent rect. 5 2
27 19.86 atmosphere 1010 14400 > th dose independent rect. 5 1
28 19.86 radiation 40 43200 > th dose independent rect. 7 1
44 19.86 radiation 40 43200 > th dose dependent rect. 7 1
65 19.92 humidity 80 43200 > th dose independent sin 18 NA
66 19.92 atmosphere 1010 14400 < th dose independent rect. 4 1
69 19.93 humidity 80 43200 < th dose independent rect. 2 16
70 19.94 radiation 10 720 < th dose independent rect. 5 2
72 19.94 humidity 80 43200 < th dose independent rect. 1 18
78 19.96 humidity 80 43200 > th dose dependent rect. 21 2
79 19.97 atmosphere 1015 43200 < th dose independent rect. 18 2
82 19.98 humidity 80 43200 > th dose independent rect. 2 17
91 19.99 atmosphere 1015 43200 > th dose dependent rect. 12 6
93 19.99 atmosphere 1015 43200 > th dose dependent rect. 11 10
100 20.00 atmosphere 1015 43200 > th dose dependent rect. 16 6
103 20.01 humidity 80 43200 < th dose independent sin 18 NA
136 20.04 humidity 80 43200 > th dose dependent rect. 10 21
148 20.06 atmosphere 1010 14400 > th dose independent rect. 23 3
158 20.07 atmosphere 1010 14400 > th dose independent rect. 1 1
167 20.07 temperature 20 720 > th dose dependent rect. 5 2
170 20.07 radiation 10 720 < th dose dependent rect. 3 11
177 20.08 atmosphere 1010 14400 > th dose independent rect. 20 10
181 20.08 atmosphere 1015 43200 > th dose dependent rect. 13 2
184 20.08 humidity 70 43200 > th dose dependent rect. 2 15
191 20.08 humidity 80 43200 > th dose dependent rect. 21 21
208 20.10 atmosphere 1010 14400 > th dose independent rect. 20 6
220 20.10 atmosphere 1015 43200 > th dose dependent rect. 20 1
227 20.10 humidity 80 43200 > th dose dependent rect. 13 13
228 20.10 humidity 70 43200 > th dose dependent rect. 11 14
238 20.11 atmosphere 1015 43200 > th dose independent rect. 19 1
239 20.11 atmosphere 1010 14400 < th dose independent rect. 1 1
247 20.11 humidity 80 43200 > th dose dependent sin 15 NA
322 20.14 humidity 80 43200 > th dose dependent no NA NA
348 20.15 humidity 80 43200 > th dose dependent rect. 20 4
375 20.16 humidity 90 43200 > th dose dependent rect. 13 2
396 20.16 humidity 80 43200 > th dose dependent rect. 3 23
399 20.17 atmosphere 1010 14400 > th dose independent sin 11 NA
429 20.18 atmosphere 1015 43200 > th dose independent rect. 15 6
434 20.18 radiation 10 1440 < th dose independent rect. 15 10
468 20.19 radiation 10 1440 < th dose independent rect. 15 4
556 20.21 humidity 80 43200 > th dose dependent rect. 18 7
600 20.22 temperature 15 43200 < th dose dependent rect. 12 13
643 20.23 radiation 10 720 < th dose dependent sin 3 NA
654 20.23 temperature 15 43200 < th dose dependent rect. 5 21
667 20.24 radiation 10 720 < th dose independent rect. 3 5
671 20.24 atmosphere 1010 14400 < th dose independent rect. 19 10
690 20.24 temperature 15 43200 < th dose dependent sin 17 NA
696 20.24 temperature 15 43200 < th dose dependent rect. 10 5
701 20.24 temperature 15 43200 < th dose dependent rect. 13 11
703 20.24 temperature 15 43200 < th dose dependent rect. 4 12
715 20.24 radiation 40 1440 < th dose dependent rect. 16 16
739 20.25 radiation 40 14400 < th dose independent rect. 7 1
758 20.25 temperature 15 43200 < th dose dependent sin 2 NA
760 20.25 temperature 15 43200 < th dose dependent no NA NA
761 20.25 humidity 80 43200 > th dose dependent sin 5 NA
776 20.25 temperature 15 43200 < th dose dependent rect. 1 17
786 20.25 temperature 15 43200 < th dose dependent rect. 12 20
791 20.25 temperature 15 43200 < th dose dependent rect. 21 21
799 20.25 temperature 15 43200 < th dose dependent rect. 19 22
867 20.26 radiation 1 1440 > th dose dependent rect. 16 16
877 20.26 temperature 15 43200 < th dose dependent rect. 23 18
953 20.27 temperature 15 43200 < th dose dependent rect. 5 2