BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0775600 Os01g0775600|AK122081
         (216 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0775600  Lissencephaly type-1-like homology motif domai...   442   e-125
Os03g0235100  Similar to Pg4                                       85   4e-17
Os02g0556600  Similar to Pherophorin-dz1 protein precursor         65   4e-11

>Os01g0775600 Lissencephaly type-1-like homology motif domain containing protein
          Length = 216

 Score =  442 bits (1137), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MMDLDPRLYENVSVSDNDVRNIVLSYLMHNCFKETAETFLSSTGLELPVDYTVDVDKRKA 60
           MMDLDPRLYENVSVSDNDVRNIVLSYLMHNCFKETAETFLSSTGLELPVDYTVDVDKRKA
Sbjct: 1   MMDLDPRLYENVSVSDNDVRNIVLSYLMHNCFKETAETFLSSTGLELPVDYTVDVDKRKA 60

Query: 61  IFSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELVRSRKCTEALEFGQKKL 120
           IFSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELVRSRKCTEALEFGQKKL
Sbjct: 61  IFSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELVRSRKCTEALEFGQKKL 120

Query: 121 TPFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVADSLNRAVLAHANRPAYS 180
           TPFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVADSLNRAVLAHANRPAYS
Sbjct: 121 TPFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVADSLNRAVLAHANRPAYS 180

Query: 181 SLERVIQQATVVRQYLQQEVGKDSYPPFSLKAFLNK 216
           SLERVIQQATVVRQYLQQEVGKDSYPPFSLKAFLNK
Sbjct: 181 SLERVIQQATVVRQYLQQEVGKDSYPPFSLKAFLNK 216



>Os03g0235100 Similar to Pg4
          Length = 246

 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 5/180 (2%)

Query: 7   RLYENVSVSDNDVRNIVLSYLMHNCFKETAETFLSSTGLELPVDYTVDVDKRKAIFSFVL 66
           R   +V +   D+  +V+++L+   F + A+ F   +G +  +D     D R  +   V 
Sbjct: 35  RKLRDVKIRKEDMNRLVMNFLVTEGFVDAADKFRVESGTQPDIDLATITD-RMEVKRAVQ 93

Query: 67  EGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELVRSRKCTEALEFGQKKLTPFGKV 126
            GN  +AI+   +L P +L+ +  L+F L     IEL+R+ K  EALEF Q++L P G+ 
Sbjct: 94  SGNVQEAIEKINDLNPTILDTNPQLYFHLQQQKLIELIRAGKINEALEFAQEELAPRGEE 153

Query: 127 PK-YVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVADSLNRAVL---AHANRPAYSSL 182
            + ++E++E  +ALL +E+ +  P   LL    R   A  +N A+L   +H   P   SL
Sbjct: 154 NQVFLEEIEKTVALLVFEDIKNCPYGELLDVSQRLKTASEVNAAILTSQSHEKDPKLPSL 213



>Os02g0556600 Similar to Pherophorin-dz1 protein precursor
          Length = 469

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 22  IVLSYLMHNCFKETAETFLSSTGLELPVDYT---------VDVDKRKAIFSFVLEGNALK 72
           IV SYL+H  +++T  +F  ++  + P ++            +  RK +   ++ G+   
Sbjct: 253 IVRSYLLHYGYQDTLNSFDMASETDPPSNHQNGYGEPPEMYGLSHRKLLRQLIMSGDIDS 312

Query: 73  AIDLTEELAPNLLENDMDL-HFDLLSLHFIELVRSRKCTEALEFGQKKLTPFGKVPKYVE 131
           A     E  P +++++  +  F L S  FIE + + +  +A+++ +  L  F     +  
Sbjct: 313 AFKKLGEWYPQVIKDETSIICFLLHSQRFIEFIGAGQLEDAVKYARSNLANFLTHKAFDG 372

Query: 132 KLEDFMALLAYEEPEKSPMFHLLSPEYRQNVADSLNRAVLA---HANRPA---YSSLERV 185
            L++ +ALLAYE+P +S + +LL    R+ VAD++N AVL+   +   P    YS LE++
Sbjct: 373 LLKESVALLAYEKPAESCIGYLLDSPQREFVADAVNAAVLSTNPNMKDPESCLYSCLEKL 432

Query: 186 IQQATVV 192
           ++Q TV 
Sbjct: 433 LRQLTVC 439



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,546,035
Number of extensions: 244907
Number of successful extensions: 512
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 3
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)