BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0749900 Os01g0749900|AK103588
(471 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0749900 Protein of unknown function DUF250 domain cont... 762 0.0
Os06g0153200 Protein of unknown function DUF250 domain cont... 286 3e-77
Os12g0136100 Protein of unknown function DUF250 domain cont... 67 4e-11
>Os01g0749900 Protein of unknown function DUF250 domain containing protein
Length = 471
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/471 (80%), Positives = 380/471 (80%)
Query: 1 MGDCVVVENGHPVPKEEDAPVVAVERLPEGAGKPREEGSRGQRKQGGIRREPSFSRWCKD 60
MGDCVVVENGHPVPKEEDAPVVAVERLPEGAGKPREEGSRGQRKQGGIRREPSFSRWCKD
Sbjct: 1 MGDCVVVENGHPVPKEEDAPVVAVERLPEGAGKPREEGSRGQRKQGGIRREPSFSRWCKD 60
Query: 61 CXXXXXXXXXXXXXXXXXXXXXXEEFEXXXXXXXXXXXXXXXXXMDIEAGAAARSDDLPI 120
C EEFE MDIEAGAAARSDDLPI
Sbjct: 61 CSAMSNAPPGGASPASAASDDDSEEFELPLLPSDSGGGGGSHLPMDIEAGAAARSDDLPI 120
Query: 121 SPWLIAKVIALIASWYTLSTCLTLYNKEMLGKHMWKFPAPFLMNTVHFTMQAVASRVIVW 180
SPWLIAKVIALIASWYTLSTCLTLYNKEMLGKHMWKFPAPFLMNTVHFTMQAVASRVIVW
Sbjct: 121 SPWLIAKVIALIASWYTLSTCLTLYNKEMLGKHMWKFPAPFLMNTVHFTMQAVASRVIVW 180
Query: 181 FQHRGLEGAASAMTWRDYFLRVVPTALATALDINLSNISLVFITVTFATMCKSXXXXXXX 240
FQHRGLEGAASAMTWRDYFLRVVPTALATALDINLSNISLVFITVTFATMCKS
Sbjct: 181 FQHRGLEGAASAMTWRDYFLRVVPTALATALDINLSNISLVFITVTFATMCKSAAPIFIL 240
Query: 241 XXXXXXXXEKPSFNLLGIILIVSFGVLLTVAKETEFNLWGFVFIMLAAVMSGFRWCMTQI 300
EKPSFNLLGIILIVSFGVLLTVAKETEFNLWGFVFIMLAAVMSGFRWCMTQI
Sbjct: 241 LFAFLFRLEKPSFNLLGIILIVSFGVLLTVAKETEFNLWGFVFIMLAAVMSGFRWCMTQI 300
Query: 301 LLQKEEYGLRNPFTLMSYVTPVMAITTAILSIAMDPWHDVRASHFFDNSTHIIRXXXXXX 360
LLQKEEYGLRNPFTLMSYVTPVMAITTAILSIAMDPWHDVRASHFFDNSTHIIR
Sbjct: 301 LLQKEEYGLRNPFTLMSYVTPVMAITTAILSIAMDPWHDVRASHFFDNSTHIIRSSLLML 360
Query: 361 XXXXXXXXXVLTEYVLXXXXXXXXXXXXGIVKEAVTILVAVLFFNDTFTWXXXXXXXXXX 420
VLTEYVL GIVKEAVTILVAVLFFNDTFTW
Sbjct: 361 LGGALAFFMVLTEYVLVSVTSAVTVTVAGIVKEAVTILVAVLFFNDTFTWLKGLGLGIII 420
Query: 421 FGVSLFNLYKYHRFKKGHRNKNCDKNPQTSSGASKYVILDDDDMENQGNSG 471
FGVSLFNLYKYHRFKKGHRNKNCDKNPQTSSGASKYVILDDDDMENQGNSG
Sbjct: 421 FGVSLFNLYKYHRFKKGHRNKNCDKNPQTSSGASKYVILDDDDMENQGNSG 471
>Os06g0153200 Protein of unknown function DUF250 domain containing protein
Length = 471
Score = 286 bits (731), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 151/284 (53%), Positives = 185/284 (65%), Gaps = 6/284 (2%)
Query: 184 RGLEGAASAMTWRDYFLRVVPTALATALDINLSNISLVFITVTFATMCKSXXXXXXXXXX 243
RG +G + R F VPTAL TALDINLSN SLVFI+VTFATMCKS
Sbjct: 186 RGGDGMEGLLHERFVF---VPTALGTALDINLSNASLVFISVTFATMCKSASPIFLLMFA 242
Query: 244 XXXXXEKPSFNLLGIILIVSFGVLLTVAKETEFNLWGFVFIMLAAVMSGFRWCMTQILLQ 303
E PS LLGII+++S GVLLTV+KETEF+ WGF+F+ LAAVMSGFRW MTQILLQ
Sbjct: 243 FAFRLESPSIKLLGIIVVISTGVLLTVSKETEFDFWGFIFVTLAAVMSGFRWSMTQILLQ 302
Query: 304 KEEYGLRNPFTLMSYVTPVMAITTAILSIAMDPWHDVRASHFFDNSTHIIRXXXXXXXXX 363
K+ YGL+NP TLMS+VTPVMAI T +LS+ MDPW D + + +FD+ H++R
Sbjct: 303 KDSYGLKNPITLMSHVTPVMAIATMVLSLLMDPWSDFQKNTYFDSPWHVMRSFLLMLVGG 362
Query: 364 XXXXXXVLTEYVLXXXXXXXXXXXXGIVKEAVTILVAVLFFNDTFTWXXXXXXXXXXFGV 423
VLTEYVL G+VKEAVTILVAV +F+D FTW GV
Sbjct: 363 TLAFFMVLTEYVLVSATSAITVTIAGVVKEAVTILVAVFYFHDEFTWLKGLGLATIMVGV 422
Query: 424 SLFNLYKYHRFKKGHRNKNCDKNPQTSSGASKYVILDDDDMENQ 467
SLFN YKY ++KKGH N++ + N + G +KY+IL DD+E+Q
Sbjct: 423 SLFNWYKYEKYKKGHINED-EVNSPSFDGDAKYIIL--DDLEDQ 463
>Os12g0136100 Protein of unknown function DUF250 domain containing protein
Length = 474
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 116/311 (37%), Gaps = 16/311 (5%)
Query: 130 ALIASWYTLSTCLTLYNKEMLGKHMWKFPAPFLMNTVHFTMQAVASRVIVWFQHRGLEGA 189
A ++ W TLS + +YNK +L M+ +P P + +H A + V+V A
Sbjct: 93 AYVSVWITLSFSVIVYNKYILDPKMYNWPFPISLTMIHMAFCASLAVVLVRVLRVVAVPA 152
Query: 190 ASAMTWRDYFLRVVPTALATALDINLSNISLVFITVTFATMCKSXXXXXXXXXXXXXXXE 249
+ MT Y VVP AL + SN + ++++V+F M K+ +
Sbjct: 153 SPPMTPSLYAASVVPIGALYALSLWFSNSAYIYLSVSFIQMLKALMPVAVYSLAVAFRTD 212
Query: 250 K----PSFNLLGIILIVSFGVLLTVAKETEFNLWGFVFIMLAAVMSGFRWCMTQILLQKE 305
N+LGI S GV + E F+ +G + + A R + QILL +
Sbjct: 213 SFRRASMLNMLGI----SAGVAVAAYGEARFDAFGVMLQLAAVAAEATRLVLIQILLTSK 268
Query: 306 EYGLRNPFTLMSYVTPVMAITTAILSIAMDPWHDVRASHFFDNSTHIIRXXXXXXXXXXX 365
L NP T + Y+ P + + PW+ V + +R
Sbjct: 269 GMSL-NPITSLYYIAPCCLVFLTL------PWYFVELPRLRAAAGAAVRPDVFVFGTNSL 321
Query: 366 XXXXV-LTEYVLXXXXXXXXXXXXGIVKEAVTILVAVLFFNDTFTWXXXXXXXXXXFGVS 424
+ L ++L G+VK+ + I + DT T GV+
Sbjct: 322 CAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIAFSWTVIKDTVTPVNLVGYGIAFLGVA 381
Query: 425 LFNLYKYHRFK 435
+N K K
Sbjct: 382 YYNHAKLQGLK 392
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,432,036
Number of extensions: 438251
Number of successful extensions: 1797
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1790
Number of HSP's successfully gapped: 7
Length of query: 471
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 367
Effective length of database: 11,605,545
Effective search space: 4259235015
Effective search space used: 4259235015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)