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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0136100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF250 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0337) R2 : 0.342
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.65 (0.116) R2dE : 0.292 R2E : 0.287
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.385 (0.071) R2dN8 : 0.0549 R2N8 : 0.0496
σ : 0.634
deviance : 185.22
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 162
memory length : 70
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.8
open length of G : 3.41

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.3 0.61 3.33 -0.703 0.326 2.35 0.0922 -7.83 0.321 20.5 93.51 71 15.9 3.18
178.8 0.623 3.29 -0.411 0.218 1.89 -0.553 -- 0.373 20 117.6 47 15.9 3.5
168.11 0.604 3.33 -0.676 0.309 2.27 -- -7.02 0.322 20.6 95.77 67 15.9 3.23
178.56 0.622 3.3 -0.378 0.263 1.56 -- -- 0.354 21.3 156.2 50 15.8 3.47
172.02 0.611 3.32 -0.671 -- 2.39 -- -6.6 0.31 -- 99.06 70 15.9 3.32
221.62 0.698 3.31 -0.321 0.893 -- -0.718 -- 0.4 18.9 -- -- -- --
222.93 0.699 3.31 -0.309 0.89 -- -- -- 0.398 19 -- -- -- --
181.39 0.627 3.3 -0.392 -- 1.7 -- -- 0.344 -- 148.8 66 15.8 3.42
182.23 0.629 3.3 -- 0.269 1.52 -- -- 0.376 20.9 153.1 57 15.8 3.37
264.57 0.76 3.29 -0.327 -- -- -- -- 0.382 -- -- -- -- --
225.44 0.702 3.3 -- 0.894 -- -- -- 0.432 18.9 -- -- -- --
185.22 0.634 3.29 -- -- 1.65 -- -- 0.385 -- 162 70 15.8 3.41
267.4 0.763 3.28 -- -- -- -- -- 0.418 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.71 humidity 90.0 90 < th dose dependent rect. 16 3
3 174.08 humidity 80.0 30 < th dose independent rect. 16 3
4 174.62 temperature 15.0 30 > th dose dependent rect. 16 3
14 176.16 temperature 20.0 30 > th dose independent rect. 16 3
17 176.99 atmosphere 995.0 30 > th dose dependent rect. 16 3
18 177.02 atmosphere 995.0 30 > th dose independent rect. 16 3
24 177.51 wind 3.0 30 > th dose independent rect. 16 3
28 178.12 wind 9.0 30 < th dose independent rect. 19 21
29 178.30 precipitation 0.1 30 < th dose independent rect. 16 3
30 178.30 precipitation 0.1 30 < th dose dependent rect. 16 3
39 178.61 radiation 20.0 30 < th dose independent rect. 16 3
40 178.62 temperature 10.0 30 > th dose independent rect. 16 3
42 178.62 atmosphere 1010.0 30 < th dose independent rect. 16 3
46 178.62 temperature 10.0 30 > th dose independent rect. 19 21
53 179.34 wind 9.0 30 < th dose independent rect. 16 3
54 179.41 wind 1.0 30 > th dose dependent rect. 16 3
65 179.82 precipitation 0.1 30 < th dose independent rect. 19 21
66 179.82 precipitation 0.1 30 < th dose dependent rect. 19 21
68 179.89 atmosphere 995.0 30 > th dose independent rect. 19 21
86 180.36 humidity 50.0 30 > th dose independent rect. 19 21
93 180.77 temperature 10.0 1440 > th dose independent rect. 17 3
96 180.77 radiation 30.0 1440 < th dose independent rect. 17 3
102 180.77 temperature 10.0 1440 > th dose independent rect. 20 21
105 180.84 radiation 1.0 90 > th dose independent rect. 16 3
130 181.38 radiation 40.0 10 < th dose dependent rect. 16 3
137 181.56 radiation 1.0 270 > th dose independent rect. 14 5
150 181.64 wind 1.0 30 > th dose independent rect. 19 21
189 182.67 humidity 50.0 10 > th dose independent rect. 16 3
240 184.23 radiation 1.0 270 > th dose dependent rect. 15 2
248 184.37 humidity 80.0 90 < th dose dependent rect. 16 10
288 185.08 radiation 10.0 270 < th dose dependent sin 14 NA
326 185.37 atmosphere 1015.0 30 < th dose independent rect. 19 21
332 185.45 humidity 50.0 270 > th dose independent rect. 17 21
345 185.70 wind 9.0 270 < th dose independent rect. 17 21
360 185.92 humidity 50.0 270 > th dose independent rect. 16 23
386 186.38 humidity 70.0 270 < th dose independent rect. 14 17
394 186.52 atmosphere 1015.0 30 < th dose dependent rect. 16 3
405 186.65 temperature 10.0 270 > th dose independent rect. 17 21
453 187.08 radiation 1.0 270 < th dose independent sin 15 NA
465 187.16 radiation 1.0 270 > th dose independent sin 15 NA
532 188.10 wind 9.0 30 < th dose dependent rect. 16 3
581 188.54 precipitation 0.1 270 < th dose independent rect. 17 21
582 188.54 precipitation 0.1 270 < th dose dependent rect. 17 21
612 188.81 atmosphere 995.0 270 > th dose independent rect. 17 21
727 189.86 radiation 1.0 270 > th dose dependent sin 13 NA
745 190.09 humidity 70.0 270 > th dose independent sin 14 NA
803 190.62 humidity 80.0 90 < th dose dependent rect. 16 17
815 190.74 temperature 20.0 30 > th dose dependent rect. 16 13
816 190.74 humidity 80.0 270 < th dose dependent rect. 14 17
819 190.76 temperature 20.0 30 > th dose dependent rect. 16 15
903 191.24 radiation 10.0 10 < th dose independent rect. 10 9
942 191.38 humidity 50.0 270 > th dose independent rect. 9 13