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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0153200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF250 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.58 (0.0968) R2 : 0.354
β1 : -5.61 (0.69) R2dD : 1.1 R2D : -0.308
β2 : 0.709 (0.143) R2dC : 0.036 R2C : -0.0636
β3 : 2.91 (0.363) R2dE : 0.543 R2E : -0.293
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -13.1 (2.98) R2dD*E : 0.393 R2D*E : -0.923
γ1 : -0.57 (0.154) R2dN8 : 0.043 R2N8 : -0.073
σ : 1.05
deviance : 509.36
__
_____
C
peak time of C : 15.3
E
wheather : temperature
threshold : 27.87
memory length : 1293
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
499.31 1.05 4.59 -5.61 0.722 2.88 -1.86 -13 -0.62 15.6 27.64 1288 -- --
531.39 1.07 4.34 -3 0.726 2.31 -2.15 -- -0.64 16.2 -6.414 1345 -- --
509.36 1.05 4.58 -5.61 0.709 2.91 -- -13.1 -0.57 15.3 27.87 1293 -- --
542.43 1.08 4.35 -3 0.734 2.31 -- -- -0.641 15.7 -0.1666 1292 -- --
535.83 1.08 4.62 -5.99 -- 2.97 -- -14.8 -0.572 -- 28.16 1354 -- --
618.07 1.17 4.25 -2.27 0.557 -- -2.13 -- -0.215 16.3 -- -- -- --
630.65 1.18 4.26 -2.29 0.544 -- -- -- -0.226 16.3 -- -- -- --
559.6 1.1 4.35 -3.05 -- 2.28 -- -- -0.662 -- 1.923 1790 -- --
715.23 1.25 4.15 -- 0.74 1.04 -- -- 0.25 15.8 31.43 1168 -- --
646.59 1.19 4.25 -2.32 -- -- -- -- -0.241 -- -- -- -- --
769.32 1.3 4.2 -- 0.588 -- -- -- 0.0291 16.2 -- -- -- --
743.07 1.27 4.15 -- -- 0.952 -- -- 0.203 -- 31.7 1116 -- --
788 1.31 4.2 -- -- -- -- -- 0.0161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 479.77 radiation 30 14400 < th dose independent rect. 16 11
2 480.27 radiation 30 14400 < th dose independent rect. 16 2
6 481.07 radiation 30 14400 < th dose independent rect. 16 9
12 482.45 radiation 30 14400 < th dose independent rect. 16 6
16 494.64 wind 5 43200 > th dose dependent rect. 6 11
20 495.12 wind 5 43200 > th dose independent rect. 9 7
24 495.45 wind 5 43200 > th dose independent rect. 6 11
25 495.46 wind 5 43200 > th dose dependent rect. 24 20
26 495.47 wind 5 43200 > th dose independent rect. 8 9
28 495.49 wind 5 43200 > th dose dependent rect. 2 18
30 495.52 wind 5 43200 < th dose independent rect. 4 13
31 495.52 wind 5 43200 > th dose dependent rect. 4 16
36 495.61 wind 5 43200 < th dose independent rect. 6 11
39 495.63 wind 5 43200 > th dose dependent rect. 24 17
44 495.67 wind 5 43200 < th dose independent rect. 9 7
48 495.70 wind 5 43200 < th dose independent rect. 2 16
51 495.73 wind 5 43200 > th dose dependent sin 23 NA
62 495.83 wind 5 43200 > th dose independent rect. 10 21
72 495.95 wind 5 43200 > th dose independent rect. 3 15
83 496.10 wind 5 43200 < th dose independent rect. 10 21
87 496.16 wind 5 43200 < th dose independent rect. 24 18
93 496.25 wind 5 43200 > th dose independent sin 0 NA
96 496.26 wind 5 43200 > th dose independent rect. 24 19
108 496.45 wind 5 43200 < th dose independent sin 0 NA
114 496.54 wind 5 43200 < th dose independent rect. 2 19
163 496.93 wind 5 43200 > th dose dependent rect. 11 21
203 497.46 wind 5 43200 > th dose dependent rect. 9 18
216 497.61 temperature 25 1440 > th dose dependent rect. 16 1
321 498.31 wind 5 43200 > th dose dependent rect. 18 23
392 498.71 wind 5 43200 > th dose dependent no NA NA
432 498.91 wind 7 43200 < th dose independent rect. 18 23
439 498.94 wind 7 43200 < th dose independent rect. 20 21
486 499.22 wind 7 43200 > th dose independent rect. 20 21
540 499.49 wind 7 43200 > th dose independent rect. 18 23
568 499.64 wind 5 43200 < th dose independent no NA NA
613 499.96 wind 5 43200 > th dose independent no NA NA
798 501.37 temperature 25 1440 > th dose dependent rect. 15 18
832 501.55 temperature 25 1440 > th dose dependent rect. 15 8