BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0747300 Os01g0747300|AK066261
(194 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0747300 Protein of unknown function DUF506, plant fami... 304 3e-83
Os05g0519300 Protein of unknown function DUF506, plant fami... 145 2e-35
Os03g0796600 Protein of unknown function DUF506, plant fami... 89 1e-18
Os10g0417800 Protein of unknown function DUF506, plant fami... 87 9e-18
Os03g0162500 Protein of unknown function DUF506, plant fami... 82 2e-16
Os01g0973600 Protein of unknown function DUF506, plant fami... 75 4e-14
Os01g0879600 71 6e-13
>Os01g0747300 Protein of unknown function DUF506, plant family protein
Length = 194
Score = 304 bits (778), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 153/194 (78%), Positives = 153/194 (78%)
Query: 1 MVMEDGEMSLSNLVLGFFEEAEREQRWPENXXXXXXXXXXXXXXXXKAFWQNQHSQLHVS 60
MVMEDGEMSLSNLVLGFFEEAEREQRWPEN KAFWQNQHSQLHVS
Sbjct: 1 MVMEDGEMSLSNLVLGFFEEAEREQRWPENGDDDDEGSSGSGAAESKAFWQNQHSQLHVS 60
Query: 61 EHSYVDVVVQTRSGKAVRVVVELNFRAEFEVARASAEYRALVTALPEVFVGRADRLRXXX 120
EHSYVDVVVQTRSGKAVRVVVELNFRAEFEVARASAEYRALVTALPEVFVGRADRLR
Sbjct: 61 EHSYVDVVVQTRSGKAVRVVVELNFRAEFEVARASAEYRALVTALPEVFVGRADRLRAVV 120
Query: 121 XXXXXXXXXXXKENNMHMGPWRKHKYMQSKWLGTPERXXXXXXXXXXXWSPEKQTKFRAS 180
KENNMHMGPWRKHKYMQSKWLGTPER WSPEKQTKFRAS
Sbjct: 121 KAMCAAAKQCMKENNMHMGPWRKHKYMQSKWLGTPERVAAAAAAPVAVWSPEKQTKFRAS 180
Query: 181 MLSFDFARAAVEVA 194
MLSFDFARAAVEVA
Sbjct: 181 MLSFDFARAAVEVA 194
>Os05g0519300 Protein of unknown function DUF506, plant family protein
Length = 306
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 56 QLHVSEHSYVDVVVQTRSGKAVRVVVELNFRAEFEVARASAEYRALVTALPEVFVGRADR 115
++ EHSYVDVV TRSGKAVRVVVE +FR EFE+AR A YRALV +LPE FVGRADR
Sbjct: 151 EIPSGEHSYVDVVAPTRSGKAVRVVVEPSFRGEFEMARGGAGYRALVASLPEAFVGRADR 210
Query: 116 LRXXXXXXXXXXXXXXKENNMHMGPWRKHKYMQSKWLGTPERXXX-----------XXXX 164
LR +E+ MHM PWRK +YM++KWL TPER
Sbjct: 211 LRGVVRVMCAAAKQCARESGMHMAPWRKQRYMEAKWLATPERVAPPGNAGGAGDAVAVGS 270
Query: 165 XXXXWSP-----EKQTKFRASMLSFDF-ARAAVEV 193
SP + Q KFRASML+ DF R AVEV
Sbjct: 271 PSSPLSPGMTNRQMQPKFRASMLTLDFGGRTAVEV 305
>Os03g0796600 Protein of unknown function DUF506, plant family protein
Length = 405
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 55 SQLHVSEHSYVDVVVQTRSGKAVRVVVELNFRAEFEVARASAEYRALVTALPEVFVGRAD 114
S EH Y+D VV G+ VR++VE++FR+EFEVAR++ YRA + ALP +FVG D
Sbjct: 208 SSYPAGEHEYIDAVV----GEEVRLIVEVDFRSEFEVARSTKAYRAALQALPPLFVGTPD 263
Query: 115 RLRXXXXXXXXXXXXXXKENNMHMGPWRKHKYMQSKWL 152
RL K+ +H PWRK +YM++KWL
Sbjct: 264 RLGQIVAVVAEAARQSLKKKGLHFPPWRKPEYMRAKWL 301
>Os10g0417800 Protein of unknown function DUF506, plant family protein
Length = 301
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 60 SEHSYVDVVVQTRSGKAVR--VVVELNFRAEFEVARASAEYRALVTALPEVFVGRADRLR 117
EH+YVDV++ S + R V+V+++FR+ FEVAR + YRAL+ LP VFVG+ DRLR
Sbjct: 176 GEHAYVDVLLPPASDRGARERVLVDVDFRSAFEVARPTKAYRALLQRLPAVFVGKDDRLR 235
Query: 118 XXXXXXXXXXXXXXKENNMHMGPWRKHKYMQSKWLGTPER 157
++ +H+ PWRK +YM++KWL +R
Sbjct: 236 LLVAASADAARASLRKRGLHLPPWRKPEYMRAKWLSPYDR 275
>Os03g0162500 Protein of unknown function DUF506, plant family protein
Length = 307
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 60 SEHSYVDVVVQTRSGKAVR--VVVELNFRAEFEVARASAEYRALVTALPEVFVGRADRLR 117
EH+Y+DV++ S +A R ++V+++FR+EFEVAR + YRA++ LP VFVG+ DRLR
Sbjct: 181 GEHAYLDVLLPPASDRAERERILVDVDFRSEFEVARPTKAYRAVLQRLPSVFVGKEDRLR 240
Query: 118 XXXXXXXXXXXXXXKENNMHMGPWRKHKYMQSKWLGTPER 157
K+ +H+ PWRK +YM++KWL ER
Sbjct: 241 LLVAAAADAARASLKKRGLHLPPWRKPEYMRAKWLSPYER 280
>Os01g0973600 Protein of unknown function DUF506, plant family protein
Length = 337
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 61 EHSYVDVVVQTRSGKAVRVVVELNFRAEFEVARASAEYRALVTALPEVFVGRADRLRXXX 120
+H Y+DV++ S R++++++FR+ FE+ARA Y +L+ +LP V+VG RL+
Sbjct: 178 DHEYIDVIMN--SDTEYRLIIDIDFRSHFEIARAVDSYDSLLNSLPVVYVGTLPRLKQFL 235
Query: 121 XXXXXXXXXXXKENNMHMGPWRKHKYMQSKWLGTPER 157
K+N+M + PWR Y+Q+KW ER
Sbjct: 236 HVMVDAAKWSLKQNSMPLPPWRSLPYLQAKWHSKYER 272
>Os01g0879600
Length = 257
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 61 EHSYVDVVVQTRSG----KAVRVVVELNFRAEFEVARASAEYRALVTALPEVFVGRADRL 116
++ Y+DV+V G R++V+++FR++F++AR + Y L + LP VFVG ++L
Sbjct: 99 DYEYIDVLVAVGHGADTSSTSRLIVDVDFRSQFQLARPAPWYAHLSSRLPPVFVGPPEKL 158
Query: 117 RXXXXXXXXXXXXXXKENNMHMGPWRKHKYMQSKWL 152
R +E+ +H+ PWR+ Y+Q+KWL
Sbjct: 159 RQAVALLCMAAQRSLRESGLHVPPWRRPSYVQAKWL 194
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.129 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,437,237
Number of extensions: 115612
Number of successful extensions: 163
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 10
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)