Os03g0796600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF506, plant family protein.
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Os03g0796600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF506, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.38 | 0.608 | 12.5 | -2.8 | 1.59 | 0.797 | 2.45 | -4.84 | -1.17 | 4.81 | 10.04 | 1487 | -- | -- |
| 199.86 | 0.658 | 12.4 | -2.2 | 1.56 | 0.758 | 1.86 | -- | -1 | 5.16 | 10.07 | 1368 | -- | -- |
| 177.8 | 0.621 | 12.5 | -2.66 | 1.76 | 0.807 | -- | -5.24 | -1.16 | 4.74 | 10.04 | 1655 | -- | -- |
| 212.25 | 0.679 | 12.4 | -2.09 | 1.55 | 0.792 | -- | -- | -0.92 | 5.35 | 10.07 | 1351 | -- | -- |
| 319.39 | 0.832 | 12.5 | -2.81 | -- | 0.817 | -- | -5.04 | -1.15 | -- | 10.03 | 1472 | -- | -- |
| 213.03 | 0.684 | 12.3 | -1.86 | 1.55 | -- | 2.6 | -- | -0.677 | 4.87 | -- | -- | -- | -- |
| 230.09 | 0.71 | 12.3 | -1.87 | 1.57 | -- | -- | -- | -0.69 | 5.06 | -- | -- | -- | -- |
| 337.11 | 0.855 | 12.4 | -2.08 | -- | 0.873 | -- | -- | -0.897 | -- | 10.25 | 1378 | -- | -- |
| 306.87 | 0.816 | 12.3 | -- | 1.65 | 0.859 | -- | -- | -0.431 | 4.91 | 60 | 472 | -- | -- |
| 359.77 | 0.886 | 12.3 | -1.81 | -- | -- | -- | -- | -0.65 | -- | -- | -- | -- | -- |
| 322.39 | 0.84 | 12.3 | -- | 1.54 | -- | -- | -- | -0.481 | 5.1 | -- | -- | -- | -- |
| 369.58 | 0.895 | 12.3 | -- | -- | 0.987 | -- | -- | -0.466 | -- | 69.23 | 34650 | -- | -- |
| 446.64 | 0.986 | 12.3 | -- | -- | -- | -- | -- | -0.448 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 2 | 154.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 4 | 154.91 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 5 | 154.93 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 8 | 154.95 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 9 | 154.95 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 12 | 155.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 25 | 155.55 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 154 | 163.22 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 169 | 163.48 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 170 | 163.49 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 191 | 163.71 | radiation | 10 | 1440 | > th | dose independent | sin | 18 | NA |
| 306 | 166.29 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 481 | 169.21 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 482 | 169.21 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 619 | 170.25 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 662 | 170.71 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 13 |
| 665 | 170.76 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 666 | 170.77 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 671 | 170.79 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 757 | 172.00 | radiation | 1 | 1440 | > th | dose dependent | sin | 16 | NA |
| 815 | 172.63 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 826 | 172.67 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 839 | 172.75 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 848 | 172.78 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 861 | 172.87 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 865 | 172.88 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 896 | 173.06 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 902 | 173.08 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 903 | 173.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 907 | 173.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 908 | 173.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 910 | 173.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 916 | 173.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 21 |