BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0737800 Os01g0737800|AK073299
         (478 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0737800  Similar to Protein farnesyltransferase beta su...   826   0.0  
Os08g0512300  Similar to Rab geranylgeranyl transferase beta...    95   1e-19
Os01g0150100  Similar to Geranylgeranyltransferase beta subunit    76   7e-14

>Os01g0737800 Similar to Protein farnesyltransferase beta subunit (EC 2.5.1.58)
           (CAAX farnesyltransferase beta subunit) (RAS proteins
           prenyltransferase beta) (FTase-beta)
          Length = 478

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/422 (94%), Positives = 399/422 (94%)

Query: 57  ELPRLTVTQVEQMKVEAKVGEIYRVLFGNAPNANSLMLELWREQHVEYLTRGLKHLGPSF 116
           ELPRLTVTQVEQMKVEAKVGEIYRVLFGNAPNANSLMLELWREQHVEYLTRGLKHLGPSF
Sbjct: 57  ELPRLTVTQVEQMKVEAKVGEIYRVLFGNAPNANSLMLELWREQHVEYLTRGLKHLGPSF 116

Query: 117 HVLDANRPWLCYWIIHALAXXXXXXXXXXXXXXXFLSRCQDKDXXXXXXXXQLPHLATTY 176
           HVLDANRPWLCYWIIHALA               FLSRCQDKD        QLPHLATTY
Sbjct: 117 HVLDANRPWLCYWIIHALALLDEIPDDVEDDIVDFLSRCQDKDGGYGGGPGQLPHLATTY 176

Query: 177 AAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFRMHDGGEIDVRASYTAISVASLV 236
           AAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFRMHDGGEIDVRASYTAISVASLV
Sbjct: 177 AAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFRMHDGGEIDVRASYTAISVASLV 236

Query: 237 NILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDKLDLASLI 296
           NILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDKLDLASLI
Sbjct: 237 NILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDKLDLASLI 296

Query: 297 GWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALALTQKLMTVVDEQLKSSYSSKRPPGDD 356
           GWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALALTQKLMTVVDEQLKSSYSSKRPPGDD
Sbjct: 297 GWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALALTQKLMTVVDEQLKSSYSSKRPPGDD 356

Query: 357 ACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIALQQYILLCAQVLDGGLRDKPGKNRD 416
           ACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIALQQYILLCAQVLDGGLRDKPGKNRD
Sbjct: 357 ACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIALQQYILLCAQVLDGGLRDKPGKNRD 416

Query: 417 HYHSCYCLSGLSVSQYSAMVDSDACPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYEFF 476
           HYHSCYCLSGLSVSQYSAMVDSDACPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYEFF
Sbjct: 417 HYHSCYCLSGLSVSQYSAMVDSDACPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYEFF 476

Query: 477 SS 478
           SS
Sbjct: 477 SS 478



>Os08g0512300 Similar to Rab geranylgeranyl transferase beta subunit (Fragment)
          Length = 319

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 118/279 (42%), Gaps = 53/279 (18%)

Query: 171 HLATTYAAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFRMHDGGEIDVRASYTAI 230
           H+  T +AV  L        L +++ D +  ++  +++  G+F     GE+D R SY AI
Sbjct: 84  HVLYTLSAVQVLCLFDR---LDALDVDKVADYIAGLQNEDGSFSGDIWGEVDTRFSYIAI 140

Query: 231 SVASLVNILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDKL 290
              SL++ L+    +   +YI  C+  +GG    P  E+H G  FC +  + +   +  +
Sbjct: 141 CTLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGGESHAGQIFCCVGALAITGSLHHI 200

Query: 291 DLASLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALALTQKLMTVVDEQLKSSYSSK 350
           D   L  W+  RQ  E G  GR  KL D CYS+W  ++L +  ++               
Sbjct: 201 DRDLLGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSSLIMIDRVH-------------- 246

Query: 351 RPPGDDACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIALQQYILLCAQVLDGGLRDK 410
                                    +I+K            L ++IL C    +GG+ D+
Sbjct: 247 -------------------------WIDKDK----------LAKFILNCQDKENGGISDR 271

Query: 411 PGKNRDHYHSCYCLSGLSVSQYSAMVDSD-ACPLPQHVL 448
           P    D YH+ + ++GLS+ +Y  +   D A  LP  V+
Sbjct: 272 PDNAVDIYHTYFGVAGLSLMEYPGVKPMDPAYALPLDVV 310



>Os01g0150100 Similar to Geranylgeranyltransferase beta subunit
          Length = 189

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 239 LDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMIL-----------LNEV 287
           +D E AK    YI  CQ+Y+GG    P +E+HGG TFC +A + L           L E 
Sbjct: 20  MDKEKAK---QYILSCQSYDGGFGLVPGSESHGGGTFCAVAALCLMGFIQVDLASNLQEP 76

Query: 288 DKLDLASLIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALALTQKLMTVVDEQLKS 345
             +D+  L+ W   RQ  + GFQGR NK  D CY+FW G  L +      +    L+S
Sbjct: 77  SSIDVRLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRS 134



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,882,569
Number of extensions: 546535
Number of successful extensions: 1031
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1029
Number of HSP's successfully gapped: 3
Length of query: 478
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 373
Effective length of database: 11,553,331
Effective search space: 4309392463
Effective search space used: 4309392463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)