BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0731800 Os01g0731800|AK121474
         (149 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0731800  RINGv domain containing protein                     241   1e-64
Os05g0207400  RINGv domain containing protein                      86   1e-17
Os01g0850200  RINGv domain containing protein                      82   2e-16
Os05g0452800  RINGv domain containing protein                      73   9e-14
Os04g0105100  RINGv domain containing protein                      64   4e-11

>Os01g0731800 RINGv domain containing protein
          Length = 149

 Score =  241 bits (616), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/149 (81%), Positives = 121/149 (81%)

Query: 1   MRRDXXXXXXXXXXXXXXXXEAVVIDVEGDPAVPAGAACRICHLXXXXXXXXXXXXIRIG 60
           MRRD                EAVVIDVEGDPAVPAGAACRICHL            IRIG
Sbjct: 1   MRRDAAAVPTAAVASPPISVEAVVIDVEGDPAVPAGAACRICHLVPEGGVGPGSEVIRIG 60

Query: 61  CGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNIIGLEVKKFMEEWHGPRLANTRTT 120
           CGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNIIGLEVKKFMEEWHGPRLANTRTT
Sbjct: 61  CGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNIIGLEVKKFMEEWHGPRLANTRTT 120

Query: 121 TQRESTCWRTQPFCFRPVSCLYIHQFLQC 149
           TQRESTCWRTQPFCFRPVSCLYIHQFLQC
Sbjct: 121 TQRESTCWRTQPFCFRPVSCLYIHQFLQC 149



>Os05g0207400 RINGv domain containing protein
          Length = 168

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 7/113 (6%)

Query: 38  ACRICHLXX-----XXXXXXXXXXIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGS 92
            CRICHL                 +R+GCGC+ EL AAHR CAEAWF ++G+RRCEICG 
Sbjct: 43  GCRICHLGGGGDGEMAAESGSGRLVRLGCGCRGELAAAHRRCAEAWFSVRGNRRCEICGE 102

Query: 93  DAKNIIGL--EVKKFMEEWHGPRLANTRTTTQRESTCWRTQPFCFRPVSCLYI 143
            A+NI G     K+FM+ WH     +   +++  S   ++   C   ++CL I
Sbjct: 103 TAENITGWGGGGKEFMKRWHATAGVDVEGSSKACSGFCKSHSLCNLLIACLII 155



>Os01g0850200 RINGv domain containing protein
          Length = 247

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 21  EAVVIDVEGDPAVPAGAACRICHLXXXXXXXXXXXXIRIGCGCKDELGAAHRHCAEAWFR 80
           EA + ++       A   CRICHL            + +GC CKD+L  AH+ CAE WF+
Sbjct: 110 EAGLAEISKASPDTAERNCRICHLGLESAAAESGSGMFLGCSCKDDLSCAHKQCAETWFK 169

Query: 81  IKGDRRCEICGSDAKNIIGLEVKKFMEEWH-GPRLANTRTTTQRESTCWRTQPFCFRPVS 139
           I+G+R CEICGS A N++G+   +F+E+W+     A ++         W+   F    ++
Sbjct: 170 IRGNRICEICGSTACNVVGIGDAEFIEQWNESSNTAASQMPASEPRRFWQGHRFLNFLLA 229

Query: 140 CLYI 143
           C+  
Sbjct: 230 CMVF 233



>Os05g0452800 RINGv domain containing protein
          Length = 244

 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%)

Query: 39  CRICHLXXXXXXXXXXXXIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNII 98
           CRICHL            I +GC CK +L  +H+ CAE WF+I+G++ CEIC S A N++
Sbjct: 125 CRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKICEICSSTACNVV 184

Query: 99  GLEVKKFMEEWH 110
           G+   + +E+W+
Sbjct: 185 GIGDSESVEQWN 196



>Os04g0105100 RINGv domain containing protein
          Length = 459

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 26  DVEGDPAVPAGAACRICHLXXXXXXXXXXXXIRIGCGCKDELGAAHRHCAEAWFRIKGDR 85
           D +G+      A CRIC +            +++ C CK EL  AH+HCA  WF +KG R
Sbjct: 202 DEDGEDIAEEEAVCRICMVELSEGSDT----LKLECSCKGELALAHKHCAMKWFTMKGTR 257

Query: 86  RCEICGSDAKNI 97
            CE+C  D +N+
Sbjct: 258 TCEVCKEDVQNL 269



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.141    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,701,804
Number of extensions: 167867
Number of successful extensions: 394
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 5
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)