Os01g0731800 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0731800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RINGv domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.72	(0.0302)	R²	:	0.634
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	1.23	(0.0737)	R²_dC	:	0.229	R²_C	:	0.296
β₃	:	-2.06	(0.119)	R²_dE	:	0.267	R²_E	:	0.376
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.328	(0.0658)	R²_dN8	:	0.0275	R²_N8	:	0.0676
σ	:	0.562
deviance	:	145.74
__

_____

C
peak time of C	:	2.05
E
wheather	:	temperature
threshold	:	34.9
memory length	:	2242
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
133.02	0.542	4.63	0.823	1.34	-2.47	0.962	-3.55	0.403	1.63	24.37	3317	--	--
139.78	0.551	4.71	0.387	1.31	-1.98	0.919	--	0.391	2.04	42.17	2050	--	--
136.61	0.544	4.63	0.784	1.33	-2.51	--	-3.64	0.395	1.63	24.2	3371	--	--
143.02	0.557	4.71	0.357	1.32	-1.98	--	--	0.385	2.06	42.98	2050	--	--
219.37	0.69	4.66	0.795	--	-2.4	--	-2.66	0.349	--	27.6	2459	--	--
208.11	0.676	4.63	1.07	1.39	--	0.943	--	0.771	1.54	--	--	--	--
211.68	0.681	4.63	1.04	1.39	--	--	--	0.765	1.56	--	--	--	--
225.46	0.699	4.72	0.215	--	-2.26	--	--	0.329	--	46.44	2474	--	--
145.74	0.562	4.72	--	1.23	-2.06	--	--	0.328	2.05	34.9	2242	--	--
330.07	0.849	4.61	1.09	--	--	--	--	0.796	--	--	--	--	--
240.05	0.725	4.66	--	1.41	--	--	--	0.65	1.58	--	--	--	--
226.48	0.701	4.73	--	--	-2.35	--	--	0.291	--	48.25	2477	--	--
361.6	0.888	4.64	--	--	--	--	--	0.674	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	132.12	temperature	25	4320	< th	dose dependent	rect.	21	8
2	132.21	temperature	25	4320	< th	dose dependent	rect.	21	6
4	132.26	temperature	20	1440	> th	dose dependent	rect.	4	2
7	132.34	temperature	20	1440	> th	dose dependent	rect.	21	10
17	132.50	temperature	20	1440	> th	dose dependent	rect.	3	4
28	132.67	temperature	10	4320	> th	dose dependent	rect.	4	1
37	132.74	temperature	30	4320	< th	dose dependent	rect.	4	1
47	132.88	temperature	25	4320	< th	dose dependent	rect.	1	2
82	133.19	temperature	10	4320	> th	dose dependent	rect.	21	8
114	133.44	temperature	25	4320	< th	dose dependent	sin	12	NA
147	133.66	temperature	10	1440	> th	dose dependent	rect.	16	15
153	133.70	temperature	20	1440	> th	dose dependent	rect.	22	1
161	133.72	temperature	10	1440	> th	dose dependent	rect.	18	13
202	133.87	temperature	20	1440	> th	dose dependent	rect.	21	4
213	133.92	temperature	20	1440	> th	dose dependent	sin	12	NA
266	134.15	temperature	10	1440	> th	dose dependent	rect.	22	1
353	134.47	temperature	10	1440	> th	dose dependent	sin	12	NA
552	135.11	temperature	25	1440	< th	dose independent	sin	15	NA
601	135.26	temperature	25	1440	< th	dose independent	rect.	14	11
874	136.07	temperature	25	1440	< th	dose independent	rect.	13	18
937	136.25	temperature	25	4320	< th	dose dependent	no	NA	NA
973	136.39	temperature	25	1440	> th	dose independent	rect.	14	11
979	136.40	temperature	25	1440	< th	dose independent	rect.	11	21