BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0731800 Os01g0731800|AK121474
(149 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05830.1 | chr5:1755910-1756825 FORWARD LENGTH=205 78 2e-15
AT2G37950.1 | chr2:15882536-15883665 REVERSE LENGTH=208 74 3e-14
AT2G34200.1 | chr2:14441105-14441882 FORWARD LENGTH=223 72 8e-14
AT5G01070.2 | chr5:25094-25799 REVERSE LENGTH=207 65 1e-11
AT5G59000.1 | chr5:23818768-23820018 FORWARD LENGTH=232 61 2e-10
AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495 59 1e-09
AT3G09760.1 | chr3:2992975-2995451 REVERSE LENGTH=492 54 4e-08
AT2G45530.1 | chr2:18756604-18757326 FORWARD LENGTH=241 52 9e-08
AT5G03180.2 | chr5:754201-756411 REVERSE LENGTH=467 49 8e-07
AT5G18760.1 | chr5:6258508-6260828 REVERSE LENGTH=412 48 2e-06
AT5G63780.1 | chr5:25525160-25526446 FORWARD LENGTH=368 47 4e-06
>AT5G05830.1 | chr5:1755910-1756825 FORWARD LENGTH=205
Length = 204
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 39 CRICHLXXXXXXXXXXXXIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNII 98
CRICH+ I +GC CK +L AAH+HCAE WF+IKG++ CE+CGS A N++
Sbjct: 79 CRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAGNVV 138
Query: 99 G---LEVKKFMEEWHGPRLANTRTTTQR---ESTCWRTQPFCFRPVSCLYI 143
G +E ++ E +G RT+ R + W+ F ++C+
Sbjct: 139 GSVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVF 189
>AT2G37950.1 | chr2:15882536-15883665 REVERSE LENGTH=208
Length = 207
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 30 DPAVPAGAACRICHLXXXXXXXXXXXXIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEI 89
D P CRICHL I +GC CKD+L AHR CAE WF+IKGD+ CEI
Sbjct: 75 DATAPPEKDCRICHLGVETSGGGA---IELGCSCKDDLAVAHRQCAETWFKIKGDKTCEI 131
Query: 90 CGSDAKNIIGLE--VKKFMEE 108
C S A+N+ G V MEE
Sbjct: 132 CQSVARNVGGANEMVGSTMEE 152
>AT2G34200.1 | chr2:14441105-14441882 FORWARD LENGTH=223
Length = 222
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 39 CRICHLXXXXX-------XXXXXXXIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICG 91
CRICH I IGC CK+ELG AH HCAEAWF+++G+ CEICG
Sbjct: 102 CRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCEICG 161
Query: 92 SDAKNIIGLEVKKFMEEWHGPR 113
AKN+ + ME+W G R
Sbjct: 162 CTAKNV----TVRLMEDWSGER 179
>AT5G01070.2 | chr5:25094-25799 REVERSE LENGTH=207
Length = 206
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 39 CRICHLXXXXXXXXXXXXIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNII 98
CRICHL + +GC CKD+LG H+ CA+ WF+IKG++ CEIC S A+N
Sbjct: 78 CRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQNFF 137
Query: 99 GLE 101
++
Sbjct: 138 KVD 140
>AT5G59000.1 | chr5:23818768-23820018 FORWARD LENGTH=232
Length = 231
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 57 IRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNIIGLEVKKFMEEWHGPRLAN 116
+++GC CK +LG AH CAE WF+IKG+ CEICG+ A N+ G + + A
Sbjct: 130 LQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALNVAGEQSNPESTASTHSQAAA 189
Query: 117 TRTTTQRES-TCWRTQP 132
++ TQ E W +P
Sbjct: 190 GQSLTQTEPRGIWHGRP 206
>AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495
Length = 494
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 26 DVEGDPAVPAGAACRICHLXXXXXXXXXXXXIRIGCGCKDELGAAHRHCAEAWFRIKGDR 85
D +G+ A CRIC + +++ C CK EL AH+ CA WF IKG++
Sbjct: 244 DADGEDIPEDEAVCRICLVELCEGGET----LKMECSCKGELALAHKDCALKWFTIKGNK 299
Query: 86 RCEICGSDAKNI 97
CE+C + KN+
Sbjct: 300 TCEVCKQEVKNL 311
>AT3G09760.1 | chr3:2992975-2995451 REVERSE LENGTH=492
Length = 491
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 26 DVEGDPAVPAG-AACRICHLXXXXXXXXXXXXIRIGCGCKDELGAAHRHCAEAWFRIKGD 84
+V+G VP A CRIC + ++ C C+ EL AH+ C WF IKG+
Sbjct: 252 NVDGAEDVPEEEAVCRICLVELGEDSEA----FKMECLCRGELALAHKECTIKWFTIKGN 307
Query: 85 RRCEICGSDAKNI 97
R C++C + +N+
Sbjct: 308 RTCDVCKQEVQNL 320
>AT2G45530.1 | chr2:18756604-18757326 FORWARD LENGTH=241
Length = 240
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 57 IRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNIIGLEVKKFMEEW 109
I +GC C+ L AHR C +AWFR KG +CEIC A N+ E + W
Sbjct: 86 IELGCQCRGGLAKAHRSCIDAWFRTKGSNQCEICQVVAVNVTPPETQPTTNYW 138
>AT5G03180.2 | chr5:754201-756411 REVERSE LENGTH=467
Length = 466
Score = 49.3 bits (116), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 37 AACRICHLXXXXXXXXXXXXIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKN 96
A CRIC + ++ C CK EL AH+ C WF IKG+ C++C + +N
Sbjct: 249 AVCRICMVEMEEDEEA----FKMECMCKGELALAHKTCTIKWFTIKGNITCDVCKQEVRN 304
Query: 97 I 97
+
Sbjct: 305 L 305
>AT5G18760.1 | chr5:6258508-6260828 REVERSE LENGTH=412
Length = 411
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 57 IRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKN--IIGLEVKKFMEEWHGPRL 114
+++ C CK +L H HCA WF KG R C++C + +N +I L V + L
Sbjct: 216 LKMECSCKGDLRLVHEHCAIKWFSTKGTRICDVCRQEVRNLPVILLRVPTINQ------L 269
Query: 115 ANTRTTTQRES 125
N R TQ+ S
Sbjct: 270 TNRRELTQQSS 280
>AT5G63780.1 | chr5:25525160-25526446 FORWARD LENGTH=368
Length = 367
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 57 IRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNIIGLEVKKFM 106
+ +GC CK+EL H CA WF G CEICG A+NI + K +
Sbjct: 135 LELGCSCKNELALVHYACALKWFLNHGSTVCEICGHPAENIKTADFNKVV 184
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.141 0.493
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,807,577
Number of extensions: 97320
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 13
Length of query: 149
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 60
Effective length of database: 8,666,545
Effective search space: 519992700
Effective search space used: 519992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 107 (45.8 bits)