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Os05g0207400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RINGv domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.54 (0.0275) R2 : 0.726
β1 : -2.63 (0.133) R2dD : 0.553 R2D : 0.0314
β2 : 1.7 (0.0629) R2dC : 0.443 R2C : 0.347
β3 : 2.13 (0.155) R2dE : 0.341 R2E : -0.0581
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.38 (0.556) R2dD*E : 0.54 R2D*E : -0.861
γ1 : -0.314 (0.0562) R2dN8 : 0.0299 R2N8 : -0.0311
σ : 0.451
deviance : 93.61
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C
peak time of C : 5.43
E
wheather : radiation
threshold : 0.5158
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.93 0.453 8.54 -2.62 1.7 2.12 0.527 7.32 -0.307 5.43 0.5301 4320 -- --
121.96 0.514 8.35 -1.47 1.58 1.13 0.565 -- 0.0075 4.73 4.658 5535 -- --
93.61 0.451 8.54 -2.63 1.7 2.13 -- 7.38 -0.314 5.43 0.5158 4320 -- --
116.96 0.504 8.34 -1.68 1.65 0.65 -- -- -0.0142 5.46 11.51 15758 -- --
127.67 0.526 8.53 -2 -- 2.57 -- 6.46 -0.2 -- 2.052 5017 -- --
135.27 0.545 8.4 -1.61 1.65 -- 0.397 -- -0.248 5.53 -- -- -- --
135.66 0.545 8.4 -1.6 1.66 -- -- -- -0.249 5.52 -- -- -- --
133.99 0.539 8.37 -1.36 -- 2.62 -- -- 0.00556 -- 2.97 2148 -- --
158.73 0.587 8.33 -- 1.66 0.642 -- -- 0.0765 5.62 0.8295 17289 -- --
278.38 0.78 8.42 -1.55 -- -- -- -- -0.209 -- -- -- -- --
203.45 0.667 8.36 -- 1.63 -- -- -- -0.0707 5.57 -- -- -- --
180.48 0.626 8.35 -- -- 2.81 -- -- 0.135 -- 2.14 2162 -- --
341.7 0.863 8.38 -- -- -- -- -- -0.0372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.05 precipitation 0.1 43200 > th dose independent rect. 6 1
2 90.05 precipitation 0.1 43200 > th dose dependent rect. 6 1
3 90.50 precipitation 0.1 43200 < th dose independent rect. 6 1
4 90.50 precipitation 0.1 43200 < th dose dependent rect. 6 1
5 90.79 radiation 1.0 43200 < th dose dependent rect. 6 1
6 90.87 humidity 80.0 43200 > th dose dependent rect. 11 2
7 90.96 humidity 90.0 43200 < th dose independent rect. 10 1
10 91.18 humidity 90.0 43200 > th dose independent rect. 10 1
12 91.44 radiation 1.0 43200 < th dose dependent rect. 6 8
14 91.50 radiation 1.0 43200 > th dose independent rect. 10 2
16 91.56 radiation 1.0 43200 < th dose independent rect. 10 2
17 91.56 radiation 1.0 43200 < th dose dependent rect. 10 2
19 91.63 temperature 20.0 43200 < th dose dependent rect. 21 1
22 91.88 radiation 1.0 14400 < th dose dependent rect. 18 22
25 91.97 radiation 1.0 14400 < th dose dependent rect. 6 17
26 91.98 radiation 1.0 14400 < th dose dependent rect. 6 14
32 92.04 radiation 1.0 14400 < th dose dependent rect. 6 23
46 92.24 temperature 20.0 43200 < th dose dependent rect. 7 1
55 92.42 temperature 20.0 43200 < th dose independent rect. 7 1
57 92.44 radiation 1.0 1440 < th dose dependent rect. 18 11
61 92.50 humidity 90.0 43200 > th dose independent rect. 9 3
64 92.54 radiation 1.0 43200 < th dose independent rect. 7 7
71 92.62 radiation 1.0 43200 > th dose independent rect. 7 7
79 92.66 temperature 20.0 43200 < th dose independent rect. 7 15
81 92.68 temperature 25.0 14400 > th dose independent rect. 4 8
85 92.69 temperature 30.0 14400 < th dose independent rect. 15 3
86 92.69 radiation 1.0 1440 < th dose dependent rect. 18 6
95 92.74 temperature 30.0 14400 > th dose independent rect. 15 3
96 92.74 temperature 20.0 43200 < th dose dependent sin 14 NA
98 92.74 radiation 1.0 14400 < th dose dependent sin 1 NA
108 92.77 temperature 20.0 14400 > th dose independent rect. 2 1
126 92.81 temperature 30.0 14400 > th dose independent rect. 15 1
130 92.81 temperature 20.0 43200 < th dose dependent rect. 7 22
136 92.83 temperature 25.0 14400 < th dose independent rect. 2 10
139 92.84 temperature 20.0 43200 > th dose independent rect. 7 1
142 92.84 radiation 1.0 1440 < th dose dependent rect. 18 8
148 92.85 temperature 30.0 14400 < th dose independent rect. 15 1
150 92.85 temperature 25.0 14400 < th dose independent rect. 4 8
160 92.87 temperature 20.0 43200 > th dose independent rect. 7 15
181 92.90 temperature 20.0 43200 < th dose dependent rect. 19 14
184 92.90 temperature 20.0 43200 < th dose dependent rect. 19 17
237 92.93 temperature 20.0 43200 < th dose dependent rect. 11 21
290 92.97 temperature 20.0 43200 < th dose dependent no NA NA
296 92.97 temperature 20.0 43200 < th dose dependent rect. 2 23
308 92.99 temperature 25.0 14400 > th dose independent rect. 8 4
317 93.00 temperature 20.0 43200 > th dose independent rect. 7 9
335 93.02 temperature 20.0 43200 < th dose independent rect. 7 9
343 93.03 temperature 25.0 14400 < th dose independent rect. 7 5
348 93.03 radiation 1.0 14400 < th dose dependent rect. 4 12
367 93.06 temperature 30.0 14400 < th dose independent rect. 14 8
374 93.06 temperature 25.0 14400 > th dose independent rect. 23 14
424 93.14 radiation 1.0 1440 < th dose dependent rect. 18 2
432 93.15 temperature 20.0 43200 < th dose independent rect. 21 2
434 93.15 temperature 25.0 14400 > th dose dependent rect. 17 1
441 93.16 temperature 20.0 14400 > th dose independent rect. 24 5
471 93.18 radiation 1.0 14400 < th dose dependent rect. 21 19
489 93.20 humidity 90.0 43200 < th dose independent rect. 9 4
509 93.23 temperature 20.0 43200 < th dose dependent rect. 2 1
537 93.25 temperature 25.0 43200 < th dose dependent rect. 14 1
541 93.25 radiation 1.0 43200 < th dose dependent rect. 21 8
547 93.26 temperature 20.0 43200 < th dose independent sin 21 NA
552 93.26 temperature 25.0 43200 < th dose dependent rect. 11 1
562 93.27 radiation 1.0 43200 < th dose dependent rect. 19 10
563 93.28 temperature 20.0 43200 > th dose independent rect. 21 1
574 93.29 temperature 25.0 43200 < th dose dependent rect. 11 4
594 93.32 radiation 1.0 43200 < th dose dependent rect. 1 4
603 93.33 radiation 1.0 43200 < th dose dependent rect. 3 2
665 93.38 temperature 20.0 14400 > th dose independent rect. 24 9
700 93.42 temperature 20.0 43200 > th dose independent sin 21 NA
735 93.44 temperature 25.0 14400 < th dose independent sin 5 NA
815 93.52 temperature 20.0 14400 < th dose independent rect. 2 3
829 93.53 temperature 25.0 14400 > th dose independent sin 5 NA
844 93.54 temperature 20.0 14400 < th dose independent rect. 2 1
869 93.56 radiation 1.0 14400 < th dose dependent rect. 4 19
964 93.64 temperature 20.0 14400 > th dose independent rect. 4 1
984 93.64 radiation 1.0 14400 < th dose dependent no NA NA
985 93.64 temperature 20.0 14400 > th dose dependent rect. 22 1