BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0207400 Os05g0207400|AK070191
         (168 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0207400  RINGv domain containing protein                     204   3e-53
Os01g0731800  RINGv domain containing protein                      65   3e-11

>Os05g0207400 RINGv domain containing protein
          Length = 168

 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/168 (72%), Positives = 121/168 (72%)

Query: 1   MAVIAAAGGEGDAGVIAHXXXXXXXXXXXXXXXXXRSRRPSTGCRICHLGGGGDGEMAAE 60
           MAVIAAAGGEGDAGVIAH                 RSRRPSTGCRICHLGGGGDGEMAAE
Sbjct: 1   MAVIAAAGGEGDAGVIAHVVVDVDESCAAAADDDDRSRRPSTGCRICHLGGGGDGEMAAE 60

Query: 61  XXXXXXXXXXXXXXXELAAAHRRCAEAWFSVRGNRRCEICGETAENITGWGGGGKEFMKR 120
                          ELAAAHRRCAEAWFSVRGNRRCEICGETAENITGWGGGGKEFMKR
Sbjct: 61  SGSGRLVRLGCGCRGELAAAHRRCAEAWFSVRGNRRCEICGETAENITGWGGGGKEFMKR 120

Query: 121 WHATAGVDVEGSSKACSGFCKSHSXXXXXXXXXXXXXXXPWLLHNHVL 168
           WHATAGVDVEGSSKACSGFCKSHS               PWLLHNHVL
Sbjct: 121 WHATAGVDVEGSSKACSGFCKSHSLCNLLIACLIIVIVLPWLLHNHVL 168



>Os01g0731800 RINGv domain containing protein
          Length = 149

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 45/83 (54%), Gaps = 13/83 (15%)

Query: 43  GCRICHL---GGGGDGEMAAEXXXXXXXXXXXXXXXELAAAHRRCAEAWFSVRGNRRCEI 99
            CRICHL   GG G G                    EL AAHR CAEAWF ++G+RRCEI
Sbjct: 38  ACRICHLVPEGGVGPGSEVIRIGCGCKD--------ELGAAHRHCAEAWFRIKGDRRCEI 89

Query: 100 CGETAENITGWGGGGKEFMKRWH 122
           CG  A+NI G     K+FM+ WH
Sbjct: 90  CGSDAKNIIGL--EVKKFMEEWH 110



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,636,224
Number of extensions: 212200
Number of successful extensions: 736
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 734
Number of HSP's successfully gapped: 3
Length of query: 168
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 75
Effective length of database: 12,179,899
Effective search space: 913492425
Effective search space used: 913492425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)