BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0207400 Os05g0207400|AK070191
(168 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37950.1 | chr2:15882536-15883665 REVERSE LENGTH=208 56 8e-09
AT2G34200.1 | chr2:14441105-14441882 FORWARD LENGTH=223 55 2e-08
AT5G05830.1 | chr5:1755910-1756825 FORWARD LENGTH=205 52 2e-07
AT5G59000.1 | chr5:23818768-23820018 FORWARD LENGTH=232 48 3e-06
AT5G01070.2 | chr5:25094-25799 REVERSE LENGTH=207 47 4e-06
>AT2G37950.1 | chr2:15882536-15883665 REVERSE LENGTH=208
Length = 207
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 16/74 (21%)
Query: 40 PSTGCRICHLG----GGGDGEMAAEXXXXXXXXXXXXXXXELAAAHRRCAEAWFSVRGNR 95
P CRICHLG GGG E+ +LA AHR+CAE WF ++G++
Sbjct: 80 PEKDCRICHLGVETSGGGAIELGC------------SCKDDLAVAHRQCAETWFKIKGDK 127
Query: 96 RCEICGETAENITG 109
CEIC A N+ G
Sbjct: 128 TCEICQSVARNVGG 141
>AT2G34200.1 | chr2:14441105-14441882 FORWARD LENGTH=223
Length = 222
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 44 CRICHLGGGGDGEMAAEXXXXXXXXXXX--XXXXELAAAHRRCAEAWFSVRGNRRCEICG 101
CRICH G E + + EL AH CAEAWF +RGN CEICG
Sbjct: 102 CRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCEICG 161
Query: 102 ETAENIT 108
TA+N+T
Sbjct: 162 CTAKNVT 168
>AT5G05830.1 | chr5:1755910-1756825 FORWARD LENGTH=205
Length = 204
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 44 CRICHLGGGGDGEMAAEXXXXXXXXXXXXXXXELAAAHRRCAEAWFSVRGNRRCEICGET 103
CRICH+ AA +LAAAH+ CAE WF ++GN+ CE+CG
Sbjct: 79 CRICHMSLD-----AANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSI 133
Query: 104 AENITG 109
A N+ G
Sbjct: 134 AGNVVG 139
>AT5G59000.1 | chr5:23818768-23820018 FORWARD LENGTH=232
Length = 231
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 76 ELAAAHRRCAEAWFSVRGNRRCEICGETAENITG 109
+L AH +CAE WF ++GN CEICG A N+ G
Sbjct: 139 DLGVAHSKCAETWFKIKGNMTCEICGAMALNVAG 172
>AT5G01070.2 | chr5:25094-25799 REVERSE LENGTH=207
Length = 206
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 40 PSTGCRICHLGGGGDGEMAAEXXXXXXXXXXXXXXXELAAAHRRCAEAWFSVRGNRRCEI 99
P CRICHLG ++ +L H++CA+ WF ++GN+ CEI
Sbjct: 74 PEKDCRICHLGLE-----SSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEI 128
Query: 100 CGETAENI 107
C A+N
Sbjct: 129 CRSIAQNF 136
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,927,989
Number of extensions: 91349
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 5
Length of query: 168
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 77
Effective length of database: 8,611,713
Effective search space: 663101901
Effective search space used: 663101901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)