BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0726700 Os01g0726700|AK100192
(662 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0726700 Conserved hypothetical protein 236 3e-62
Os02g0230300 Proline-and threonine-rich protein 88 3e-17
Os01g0201600 Virulence factor, pectin lyase fold family pro... 76 8e-14
>Os01g0726700 Conserved hypothetical protein
Length = 662
Score = 236 bits (603), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 110/117 (94%)
Query: 546 NTAPFPCSYWLSHPGVIWGLFGFWCPMARLFGPTAAAPFGHDLTVPEALANTRADGVGEL 605
NTAPFPCSYWLSHPGVIWGLFGFWCPMARLFGPTAAAPFGHDLTVPEALANTRADGVGEL
Sbjct: 546 NTAPFPCSYWLSHPGVIWGLFGFWCPMARLFGPTAAAPFGHDLTVPEALANTRADGVGEL 605
Query: 606 YREGTASLLNSMVNSRFPFTTQQVKDAFSAALSSGGDHXXXXXXXLFKKANEGHVMR 662
YREGTASLLNSMVNSRFPFTTQQVKDAFSAALSSGGDH LFKKANEGHVMR
Sbjct: 606 YREGTASLLNSMVNSRFPFTTQQVKDAFSAALSSGGDHAAAAQAQLFKKANEGHVMR 662
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/49 (87%), Positives = 43/49 (87%)
Query: 1 MVPMAKALAVVSAFCLLVXXXXXXRSLVDVIGGAFGGRKDYYTPGPTGQ 49
MVPMAKALAVVSAFCLLV RSLVDVIGGAFGGRKDYYTPGPTGQ
Sbjct: 1 MVPMAKALAVVSAFCLLVAPAAAARSLVDVIGGAFGGRKDYYTPGPTGQ 49
>Os02g0230300 Proline-and threonine-rich protein
Length = 219
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 552 CSYWLSHPGVIWGLFGFWCPMARLFGPTAAAPFGHDL-TVPEALANTRADGVGELYREGT 610
C YW +HP VI G + + G + G L + +AL+NT DG G L REG
Sbjct: 112 CDYWKNHPDVIISAIGSLGDIGKTLGTACSLITGKKLENLHDALSNTGTDGTGALLREGA 171
Query: 611 ASLLNSMVNSRFPFTTQQVKDAFSAALSSGGDHXXXXXXXLFKKANEGH 659
A+ LNS+VN +FPFTTQQVKD A++S D +FKKAN+ H
Sbjct: 172 AAYLNSIVNKKFPFTTQQVKDCIVVAMTS--DGAASSQAEIFKKANDYH 218
>Os01g0201600 Virulence factor, pectin lyase fold family protein
Length = 301
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%)
Query: 547 TAPFPCSYWLSHPGVIWGLFGFWCPMARLFGPTAAAPFGHDLTVPEALANTRADGVGELY 606
T P C YW SHP +W G W F + + G +++ +ALANTR DG GEL
Sbjct: 187 TTPGTCDYWRSHPMEMWSALGRWPSSVGHFFGSGSGGAGTGMSIQDALANTRGDGAGELM 246
Query: 607 REGTASLLNSMVNSRFPFTTQQVK 630
REG A+LLNSM S FP+T +QV+
Sbjct: 247 REGAAALLNSMTRSGFPYTAEQVR 270
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,675,789
Number of extensions: 197800
Number of successful extensions: 311
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 4
Length of query: 662
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 555
Effective length of database: 11,448,903
Effective search space: 6354141165
Effective search space used: 6354141165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)