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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0726700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0327) R2 : 0.0178
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.198 (0.0688) R2dN8 : 0.0229 R2N8 : 0.0178
σ : 0.615
deviance : 173.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.48 0.565 3.31 -2.28 0.468 1.79 0.194 -12 0.182 7.46 30.1 4366 -- --
151.04 0.572 3.15 -0.798 0.403 0.932 0.552 -- -0.0471 7.2 19 7590 -- --
144.58 0.56 3.31 -2.26 0.468 1.78 -- -11.9 0.182 7.52 30.1 4365 -- --
150.37 0.571 3.14 -0.799 0.448 1.03 -- -- -0.0729 7.51 18.9 7630 -- --
156.02 0.582 3.3 -2.13 -- 1.78 -- -11.8 0.248 -- 30.2 4352 -- --
162.81 0.598 3.09 -0.128 0.443 -- 0.159 -- 0.178 7.49 -- -- -- --
162.88 0.598 3.09 -0.124 0.443 -- -- -- 0.178 7.56 -- -- -- --
161.16 0.591 3.15 -0.774 -- 1.01 -- -- -0.0531 -- 18.8 7581 -- --
154.71 0.582 3.11 -- 0.446 0.338 -- -- 0.0671 6.64 23.5 7410 -- --
173.38 0.615 3.1 -0.117 -- -- -- -- 0.185 -- -- -- -- --
163.28 0.598 3.08 -- 0.442 -- -- -- 0.192 7.58 -- -- -- --
165.07 0.6 3.12 -- -- 0.326 -- -- 0.0792 -- 23.5 6037 -- --
173.75 0.615 3.09 -- -- -- -- -- 0.198 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.70 wind 5 43200 > th dose dependent rect. 15 1
2 142.12 wind 5 43200 > th dose independent rect. 12 5
3 142.13 wind 5 43200 < th dose independent rect. 11 6
6 142.20 wind 5 43200 > th dose independent rect. 15 1
17 142.41 radiation 30 14400 < th dose independent rect. 16 4
18 142.43 wind 5 43200 < th dose independent rect. 15 1
24 142.52 radiation 20 14400 < th dose independent rect. 5 1
30 142.56 wind 3 43200 > th dose dependent rect. 11 6
31 142.57 wind 5 43200 < th dose independent rect. 10 9
34 142.59 wind 3 43200 > th dose dependent rect. 12 4
53 142.72 radiation 30 14400 < th dose independent rect. 16 8
56 142.73 radiation 20 14400 < th dose independent rect. 20 10
79 142.89 radiation 30 14400 < th dose independent rect. 16 13
86 142.92 radiation 1 1440 < th dose dependent rect. 18 2
89 142.93 radiation 30 14400 < th dose independent rect. 16 11
107 143.07 radiation 1 1440 < th dose dependent rect. 18 9
114 143.09 radiation 1 1440 < th dose dependent rect. 18 7
140 143.21 radiation 20 14400 < th dose independent rect. 18 12
152 143.33 wind 5 43200 < th dose independent sin 20 NA
186 143.47 wind 5 43200 > th dose independent sin 20 NA
192 143.49 temperature 30 4320 < th dose independent rect. 15 17
193 143.49 wind 9 43200 < th dose dependent rect. 11 5
207 143.56 temperature 30 4320 < th dose independent rect. 15 12
208 143.56 temperature 30 4320 < th dose independent rect. 15 14
209 143.57 temperature 30 4320 < th dose independent rect. 15 10
212 143.58 temperature 30 4320 > th dose independent rect. 15 4
215 143.58 temperature 30 4320 < th dose independent rect. 15 5
229 143.59 temperature 30 4320 > th dose independent sin 14 NA
230 143.59 temperature 30 4320 < th dose independent sin 14 NA
231 143.59 temperature 30 4320 > th dose independent rect. 15 2
255 143.66 temperature 30 4320 > th dose independent rect. 12 7
305 143.75 radiation 1 14400 < th dose dependent rect. 4 1
330 143.82 temperature 30 4320 < th dose independent rect. 15 2
337 143.83 radiation 1 14400 < th dose dependent rect. 2 3
341 143.84 wind 3 43200 > th dose dependent sin 20 NA
343 143.85 temperature 30 4320 < th dose independent rect. 12 20
353 143.88 temperature 30 4320 < th dose independent rect. 12 17
358 143.89 temperature 30 4320 < th dose independent rect. 12 8
360 143.89 temperature 30 4320 < th dose independent rect. 12 13
361 143.89 temperature 30 4320 < th dose independent rect. 12 15
369 143.90 temperature 30 4320 < th dose independent rect. 12 11
584 144.35 wind 9 43200 < th dose dependent rect. 11 11
622 144.43 humidity 80 43200 < th dose independent rect. 21 1
735 144.64 radiation 40 43200 > th dose independent rect. 9 2
768 144.67 temperature 30 4320 > th dose independent rect. 18 23
821 144.73 temperature 30 4320 > th dose independent no NA NA
941 144.77 temperature 30 4320 < th dose independent rect. 24 20
942 144.77 temperature 30 4320 < th dose independent rect. 4 21
943 144.77 temperature 30 4320 < th dose independent rect. 22 21
947 144.77 temperature 30 4320 < th dose independent rect. 2 23
948 144.77 temperature 30 4320 < th dose independent rect. 4 23
949 144.77 temperature 30 4320 < th dose independent rect. 6 23
952 144.78 temperature 30 4320 < th dose independent no NA NA
953 144.78 temperature 30 4320 < th dose independent rect. 6 14
954 144.78 temperature 30 4320 < th dose independent rect. 4 15
957 144.78 temperature 30 4320 < th dose independent rect. 2 17
961 144.78 temperature 30 4320 < th dose independent rect. 6 19
965 144.78 temperature 30 4320 < th dose independent rect. 6 21
980 144.79 temperature 30 4320 < th dose independent rect. 6 17