BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0726700 Os01g0726700|AK100192
         (662 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42840.1  | chr2:17826327-17827426 REVERSE LENGTH=307          105   7e-23

>AT2G42840.1 | chr2:17826327-17827426 REVERSE LENGTH=307
          Length = 306

 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 71/113 (62%), Gaps = 6/113 (5%)

Query: 552 CSYWLSHPGVIWGLFGFWCPMARLFG----PTAAAPFGHDLTVPEALANTRADGVGELYR 607
           C YW +HP +IWGL G+W  +   FG    P++   F   + + +AL+NTR+D +G LYR
Sbjct: 192 CDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTRSDPIGALYR 251

Query: 608 EGTASLLNSMVNSRFPFTTQQVKDAFSAALSSGGDHXXXXXXXLFKKANEGHV 660
           EGTAS LNSMVN +FPFTT QV+D F A LSS  +         FK ANEG +
Sbjct: 252 EGTASWLNSMVNHKFPFTTPQVRDHFVAGLSS--NKAATKQAHTFKLANEGRL 302



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,860,973
Number of extensions: 106917
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 557
Effective length of database: 8,227,889
Effective search space: 4582934173
Effective search space used: 4582934173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)