Os01g0201600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os01g0201600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 317.1 | 0.837 | 4.92 | 2.25 | 0.407 | -1.85 | 1.74 | 2.36 | -0.301 | 19.6 | 20.49 | 1314 | -- | -- |
| 316.11 | 0.828 | 5 | 1.79 | 0.502 | -2.14 | 1.96 | -- | -0.442 | 20 | 15.83 | 2431 | -- | -- |
| 324.88 | 0.839 | 4.93 | 2.21 | 0.45 | -1.74 | -- | 2.28 | -0.321 | 18 | 20.83 | 1469 | -- | -- |
| 325.66 | 0.84 | 5 | 1.74 | 0.524 | -2.16 | -- | -- | -0.439 | 19.3 | 14.7 | 2430 | -- | -- |
| 334.16 | 0.851 | 4.91 | 2.21 | -- | -1.81 | -- | 2.34 | -0.303 | -- | 20.78 | 1360 | -- | -- |
| 411.57 | 0.951 | 5.1 | 0.933 | 0.474 | -- | 1.71 | -- | -0.889 | 18.7 | -- | -- | -- | -- |
| 417.21 | 0.957 | 5.09 | 0.913 | 0.514 | -- | -- | -- | -0.881 | 17.4 | -- | -- | -- | -- |
| 335.62 | 0.853 | 4.99 | 1.77 | -- | -2.05 | -- | -- | -0.447 | -- | 16.3 | 2776 | -- | -- |
| 388.3 | 0.918 | 5.06 | -- | 0.427 | -1.64 | -- | -- | -0.74 | 18.8 | 13.99 | 1298 | -- | -- |
| 430.97 | 0.97 | 5.09 | 0.895 | -- | -- | -- | -- | -0.894 | -- | -- | -- | -- | -- |
| 439.17 | 0.98 | 5.12 | -- | 0.499 | -- | -- | -- | -0.983 | 17.5 | -- | -- | -- | -- |
| 393.05 | 0.923 | 5.05 | -- | -- | -1.25 | -- | -- | -0.749 | -- | 21.1 | 1359 | -- | -- |
| 452.11 | 0.992 | 5.11 | -- | -- | -- | -- | -- | -0.993 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 310.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 2 | 310.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 9 | 311.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 11 | 311.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 37 | 312.50 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 132 | 314.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 133 | 314.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 137 | 314.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 138 | 314.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 185 | 315.08 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 249 | 315.60 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 260 | 315.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 266 | 315.70 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 281 | 315.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 355 | 316.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 629 | 317.82 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 643 | 317.89 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 653 | 317.93 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 668 | 317.99 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 672 | 318.01 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 690 | 318.09 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 711 | 318.21 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 749 | 318.37 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 790 | 318.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 858 | 318.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 882 | 318.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 904 | 318.91 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 914 | 318.96 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 918 | 318.97 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 934 | 318.98 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 978 | 319.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 23 |