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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0230300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proline-and threonine-rich protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0215) R2 : 1.33e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.000353 (0.0452) R2dN8 : 1.72e-07 R2N8 : 1.33e-07
σ : 0.404
deviance : 75.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.68 0.395 3.09 1.11 0.118 -0.668 0.211 5.13 0.136 6.12 28.15 1733 -- --
72.46 0.396 3.19 0.223 0.163 -0.148 0.167 -- 0.0488 5.5 17.9 2542 -- --
70.78 0.392 3.09 1.11 0.121 -0.667 -- 5.1 0.13 5.94 28.22 1713 -- --
72.33 0.396 3.18 0.254 0.155 -0.169 -- -- 0.0687 5.85 16.5 7254 -- --
71.51 0.394 3.09 1.12 -- -0.672 -- 5.1 0.142 -- 28.09 1740 -- --
72.98 0.4 3.2 0.16 0.155 -- 0.165 -- 0.0159 6.05 -- -- -- --
73.04 0.4 3.2 0.161 0.156 -- -- -- 0.0152 5.96 -- -- -- --
73.6 0.4 3.19 0.271 -- -0.197 -- -- 0.0766 -- 14.86 7698 -- --
73.63 0.4 3.2 -- 0.16 -0.0535 -- -- 0.00814 5.85 20.79 5830 -- --
74.31 0.403 3.2 0.166 -- -- -- -- 0.0188 -- -- -- -- --
73.73 0.402 3.2 -- 0.159 -- -- -- -0.00279 5.91 -- -- -- --
74.09 0.401 3.2 -- -- -0.0772 -- -- 0.0255 -- 33.9 7545 -- --
75.04 0.404 3.21 -- -- -- -- -- 0.000353 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.36 precipitation 0.1 90 > th dose independent rect. 2 1
2 56.36 precipitation 0.1 90 > th dose dependent rect. 2 1
15 66.07 wind 1.0 270 < th dose dependent rect. 24 1
17 66.37 atmosphere 1005.0 90 > th dose dependent rect. 2 2
33 67.79 wind 1.0 270 < th dose independent rect. 24 1
38 68.12 humidity 90.0 30 < th dose dependent rect. 22 1
40 68.15 humidity 90.0 30 < th dose independent rect. 22 1
41 68.15 temperature 25.0 30 > th dose dependent rect. 22 1
43 68.21 wind 1.0 30 > th dose independent rect. 22 1
44 68.21 temperature 15.0 30 > th dose dependent rect. 22 1
45 68.21 atmosphere 1005.0 30 > th dose dependent rect. 22 1
46 68.22 wind 9.0 1440 < th dose independent rect. 23 1
47 68.22 temperature 10.0 1440 > th dose independent rect. 23 1
50 68.22 temperature 30.0 1440 < th dose independent rect. 23 1
54 68.22 humidity 50.0 1440 > th dose independent rect. 23 1
64 68.22 atmosphere 995.0 1440 > th dose independent rect. 23 1
65 68.22 radiation 1.0 1440 < th dose independent rect. 23 1
85 68.22 temperature 10.0 1440 > th dose independent rect. 24 23
90 68.22 radiation 1.0 1440 < th dose dependent rect. 23 1
95 68.23 temperature 20.0 30 > th dose independent rect. 22 1
96 68.23 atmosphere 1005.0 30 > th dose independent rect. 22 1
98 68.24 wind 7.0 30 < th dose independent rect. 22 1
100 68.24 temperature 10.0 30 > th dose independent rect. 22 1
102 68.24 temperature 30.0 30 < th dose independent rect. 22 1
103 68.24 humidity 50.0 30 > th dose independent rect. 22 1
106 68.24 atmosphere 995.0 30 > th dose independent rect. 22 1
107 68.24 atmosphere 1010.0 30 < th dose independent rect. 22 1
109 68.24 radiation 1.0 30 < th dose independent rect. 22 1
114 68.24 precipitation 0.1 30 < th dose independent rect. 22 1
115 68.24 temperature 10.0 30 > th dose independent rect. 23 23
117 68.24 radiation 1.0 30 < th dose dependent rect. 22 1
122 68.24 precipitation 0.1 30 < th dose dependent rect. 22 1
124 68.26 wind 9.0 30 < th dose dependent rect. 22 1
129 68.28 wind 1.0 30 > th dose dependent rect. 22 1
131 68.30 humidity 50.0 30 > th dose dependent rect. 22 1
134 68.34 atmosphere 1015.0 30 < th dose dependent rect. 22 1
144 68.46 temperature 30.0 30 < th dose dependent rect. 22 1
159 68.69 wind 9.0 30 < th dose independent rect. 23 23
160 68.70 precipitation 0.1 1440 < th dose independent rect. 24 2
161 68.70 precipitation 0.1 1440 < th dose dependent rect. 24 2
201 68.90 radiation 40.0 720 < th dose independent rect. 15 8
202 68.94 temperature 10.0 720 > th dose independent rect. 15 8
203 68.94 temperature 10.0 720 > th dose independent rect. 23 16
223 69.12 temperature 10.0 720 > th dose independent rect. 3 8
224 69.12 atmosphere 995.0 720 > th dose independent rect. 3 8
225 69.12 temperature 10.0 720 > th dose independent rect. 11 16
227 69.14 atmosphere 1015.0 720 < th dose independent rect. 3 8
234 69.25 wind 9.0 720 < th dose independent rect. 3 8
247 69.50 atmosphere 995.0 720 > th dose independent rect. 23 16
248 69.51 wind 9.0 720 < th dose independent rect. 15 8
254 69.56 atmosphere 995.0 30 > th dose independent rect. 23 23
256 69.60 wind 5.0 14400 < th dose independent rect. 11 1
257 69.68 precipitation 0.1 1440 > th dose independent rect. 24 1
258 69.68 precipitation 0.1 1440 > th dose dependent rect. 24 1
259 69.68 humidity 80.0 14400 < th dose dependent rect. 1 8
260 69.70 precipitation 0.1 1440 > th dose independent rect. 23 4
261 69.70 precipitation 0.1 1440 > th dose dependent rect. 23 4
278 69.79 wind 5.0 14400 > th dose independent rect. 11 1
279 69.80 atmosphere 1005.0 90 > th dose independent rect. 2 1
281 69.81 precipitation 0.1 720 < th dose independent rect. 15 8
282 69.81 precipitation 0.1 720 < th dose dependent rect. 15 8
288 69.83 wind 3.0 14400 > th dose dependent rect. 11 1
301 69.91 atmosphere 1005.0 10 > th dose independent rect. 2 2
308 69.95 atmosphere 995.0 90 > th dose independent rect. 3 23
312 69.97 wind 9.0 720 < th dose independent rect. 23 16
314 69.99 temperature 25.0 720 > th dose dependent rect. 3 5
316 70.01 wind 3.0 90 < th dose independent rect. 2 1
319 70.02 wind 7.0 14400 < th dose dependent rect. 11 1
325 70.05 temperature 20.0 10 > th dose independent rect. 2 2
330 70.07 humidity 80.0 14400 < th dose dependent rect. 7 1
341 70.13 radiation 1.0 43200 < th dose dependent rect. 3 1
354 70.19 temperature 25.0 30 > th dose independent rect. 20 3
358 70.21 temperature 25.0 270 > th dose independent rect. 1 1
367 70.23 wind 5.0 90 < th dose dependent rect. 2 1
374 70.26 temperature 25.0 720 > th dose independent rect. 3 6
384 70.28 temperature 25.0 720 > th dose independent rect. 4 4
388 70.29 temperature 25.0 90 > th dose dependent rect. 2 2
390 70.30 temperature 25.0 90 > th dose independent rect. 1 3
392 70.30 humidity 50.0 720 > th dose independent rect. 3 8
396 70.33 wind 9.0 720 < th dose independent rect. 11 16
407 70.37 humidity 90.0 90 < th dose independent rect. 2 3
414 70.38 temperature 10.0 90 > th dose independent rect. 2 1
416 70.38 temperature 30.0 90 < th dose independent rect. 2 1
417 70.38 humidity 50.0 90 > th dose independent rect. 2 1
421 70.38 atmosphere 1010.0 90 < th dose independent rect. 2 1
423 70.38 radiation 1.0 90 < th dose independent rect. 2 1
432 70.38 temperature 10.0 90 > th dose independent rect. 3 23
433 70.38 radiation 1.0 90 < th dose dependent rect. 2 1
440 70.39 precipitation 0.1 720 < th dose independent rect. 11 16
441 70.39 precipitation 0.1 720 < th dose dependent rect. 11 16
443 70.40 wind 1.0 30 < th dose dependent rect. 2 1
446 70.42 wind 1.0 90 > th dose independent rect. 1 22
447 70.42 atmosphere 1010.0 30 < th dose dependent rect. 2 1
450 70.43 temperature 10.0 90 > th dose dependent rect. 2 1
451 70.44 wind 1.0 10 < th dose independent rect. 2 1
452 70.44 precipitation 0.1 90 < th dose independent rect. 2 1
453 70.44 humidity 50.0 90 > th dose dependent rect. 2 1
454 70.44 precipitation 0.1 90 < th dose dependent rect. 2 1
466 70.46 temperature 25.0 30 > th dose dependent rect. 20 3
467 70.47 humidity 70.0 14400 > th dose independent rect. 8 1
469 70.47 temperature 25.0 720 > th dose dependent rect. 24 9
476 70.49 atmosphere 1005.0 30 > th dose dependent rect. 20 3
480 70.50 wind 9.0 90 < th dose independent rect. 3 23
484 70.51 wind 1.0 90 > th dose independent rect. 2 1
497 70.51 temperature 30.0 30 < th dose dependent rect. 2 1
539 70.53 humidity 90.0 30 > th dose independent rect. 2 1
549 70.54 temperature 25.0 720 > th dose independent rect. 6 1
631 70.62 humidity 80.0 4320 > th dose independent rect. 5 3
645 70.65 humidity 70.0 14400 < th dose independent rect. 8 1
652 70.66 humidity 70.0 14400 > th dose independent rect. 24 9
695 70.71 precipitation 0.1 30 < th dose independent rect. 3 23
698 70.71 precipitation 0.1 30 < th dose dependent rect. 3 23
704 70.72 temperature 25.0 4320 > th dose dependent rect. 6 1
706 70.72 radiation 1.0 720 < th dose dependent rect. 18 9
732 70.76 humidity 80.0 4320 < th dose independent rect. 5 3
744 70.77 wind 9.0 4320 > th dose independent rect. 4 9
745 70.77 humidity 70.0 720 > th dose independent rect. 18 9
761 70.79 wind 9.0 4320 < th dose independent sin 5 NA
792 70.80 wind 9.0 4320 > th dose independent sin 5 NA
804 70.80 radiation 1.0 90 < th dose dependent rect. 1 22
812 70.81 wind 9.0 4320 < th dose independent rect. 2 11
817 70.81 wind 7.0 4320 > th dose dependent rect. 2 12
826 70.83 temperature 30.0 14400 < th dose independent rect. 11 5
836 70.84 temperature 30.0 14400 > th dose independent rect. 11 5
837 70.84 temperature 30.0 14400 < th dose independent rect. 11 7
847 70.85 temperature 30.0 14400 > th dose independent rect. 11 7
859 70.86 wind 9.0 1440 < th dose independent rect. 3 1
860 70.86 temperature 10.0 1440 > th dose independent rect. 3 1
863 70.86 temperature 30.0 1440 < th dose independent rect. 3 1
867 70.86 humidity 50.0 1440 > th dose independent rect. 3 1
876 70.86 atmosphere 995.0 1440 > th dose independent rect. 3 1
877 70.86 radiation 1.0 1440 < th dose independent rect. 3 1
897 70.86 temperature 30.0 14400 > th dose independent rect. 15 3
900 70.86 temperature 30.0 14400 < th dose independent rect. 14 4
932 70.86 temperature 10.0 1440 > th dose independent rect. 4 23
949 70.87 temperature 30.0 14400 > th dose independent rect. 11 2
950 70.87 temperature 30.0 14400 < th dose independent rect. 11 2
974 70.87 wind 9.0 4320 < th dose independent rect. 23 14
994 70.88 humidity 90.0 720 < th dose independent rect. 1 4