BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0725800 Os01g0725800|AK101974
(628 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0725800 Protein kinase domain containing protein 1038 0.0
AK063441 806 0.0
Os05g0571000 Protein kinase-like domain containing protein 302 5e-82
Os02g0771100 Similar to COP1 (Fragment) 194 2e-49
Os08g0295201 71 2e-12
>Os01g0725800 Protein kinase domain containing protein
Length = 628
Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/628 (82%), Positives = 520/628 (82%)
Query: 1 MEGSRVDAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSLREW 60
MEGSRVDAVA VSLREW
Sbjct: 1 MEGSRVDAVAGGRRWGEGEEGGRRGGGGGGGGGGGGTGGGGGGGGRRGGEDGGEVSLREW 60
Query: 61 LDRPGRAVEAPECLHVFRQVAESVAIAHAQGVAVGSARPSCFVVSPPFARVAFIXXXXXX 120
LDRPGRAVEAPECLHVFRQVAESVAIAHAQGVAVGSARPSCFVVSPPFARVAFI
Sbjct: 61 LDRPGRAVEAPECLHVFRQVAESVAIAHAQGVAVGSARPSCFVVSPPFARVAFIESASGS 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXASGGEDRGGKTFPLRSVLAMELTWYTSPEEAD 180
ASGGEDRGGKTFPLRSVLAMELTWYTSPEEAD
Sbjct: 121 DVSGSCSGSDGSEEADPEPSPPRRRRDGASGGEDRGGKTFPLRSVLAMELTWYTSPEEAD 180
Query: 181 DRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLRHRVLPPQLLLKWPKEASFCQL 240
DRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLRHRVLPPQLLLKWPKEASFCQL
Sbjct: 181 DRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLRHRVLPPQLLLKWPKEASFCQL 240
Query: 241 LMHPVPETRPKMSDVLQSEFLNRSRNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQD 300
LMHPVPETRPKMSDVLQSEFLNRSRNS KQD
Sbjct: 241 LMHPVPETRPKMSDVLQSEFLNRSRNSLEEREAALRLREEIEEQELLLDFLLQLQRRKQD 300
Query: 301 IADNLQDTVAFLSSDINEAHQQSALGQCGNFSFELDKEVCSETVEDQSDCGSRKRFRPEL 360
IADNLQDTVAFLSSDINEAHQQSALGQCGNFSFELDKEVCSETVEDQSDCGSRKRFRPEL
Sbjct: 301 IADNLQDTVAFLSSDINEAHQQSALGQCGNFSFELDKEVCSETVEDQSDCGSRKRFRPEL 360
Query: 361 PAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLETAYFLTRSKLAKQVGN 420
PAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLETAYFLTRSKLAKQVGN
Sbjct: 361 PAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLETAYFLTRSKLAKQVGN 420
Query: 421 PVSSCHQVVKRTTGSPVVTEGSSIDDFALEGHYGTRQRGWMNSFLEGLCSYLSFSKLKVK 480
PVSSCHQVVKRTTGSPVVTEGSSIDDFALEGHYGTRQRGWMNSFLEGLCSYLSFSKLKVK
Sbjct: 421 PVSSCHQVVKRTTGSPVVTEGSSIDDFALEGHYGTRQRGWMNSFLEGLCSYLSFSKLKVK 480
Query: 481 AELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVFEYNMIVNEHCDIHYPVVEMSN 540
AELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVFEYNMIVNEHCDIHYPVVEMSN
Sbjct: 481 AELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVFEYNMIVNEHCDIHYPVVEMSN 540
Query: 541 RSKLSCICWNSYMKSHIASSDFEGIVQVWDVTRSQVFVEMREHERRVWSVDFSLADPTKL 600
RSKLSCICWNSYMKSHIASSDFEGIVQVWDVTRSQVFVEMREHERRVWSVDFSLADPTKL
Sbjct: 541 RSKLSCICWNSYMKSHIASSDFEGIVQVWDVTRSQVFVEMREHERRVWSVDFSLADPTKL 600
Query: 601 VSGSDDGSVKLWNMNQAILFLHLVYVSF 628
VSGSDDGSVKLWNMNQAILFLHLVYVSF
Sbjct: 601 VSGSDDGSVKLWNMNQAILFLHLVYVSF 628
>AK063441
Length = 488
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/465 (86%), Positives = 401/465 (86%)
Query: 55 VSLREWLDRPGRAVEAPECLHVFRQVAESVAIAHAQGVAVGSARPSCFVVSPPFARVAFI 114
VSLREWLDRPGRAVEAPECLHVFRQVAESVAIAHAQGVAVGSARPSCFVVSPPFARVAFI
Sbjct: 24 VSLREWLDRPGRAVEAPECLHVFRQVAESVAIAHAQGVAVGSARPSCFVVSPPFARVAFI 83
Query: 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGGEDRGGKTFPLRSVLAMELTWYT 174
ASGGEDRGGKTFPLRSVLAMELTWYT
Sbjct: 84 ESASGSDVSGSCSGSDGSEEADPEPSPPRRRRDGASGGEDRGGKTFPLRSVLAMELTWYT 143
Query: 175 SPEEADDRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLRHRVLPPQLLLKWPKE 234
SPEEADDRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLRHRVLPPQLLLKWPKE
Sbjct: 144 SPEEADDRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLRHRVLPPQLLLKWPKE 203
Query: 235 ASFCQLLMHPVPETRPKMSDVLQSEFLNRSRNSXXXXXXXXXXXXXXXXXXXXXXXXXXX 294
ASFCQLLMHPVPETRPKMSDVLQSEFLNRSRNS
Sbjct: 204 ASFCQLLMHPVPETRPKMSDVLQSEFLNRSRNSLEEREAALRLREEIEEQELLLDFLLQL 263
Query: 295 XXXKQDIADNLQDTVAFLSSDINEAHQQSALGQCGNFSFELDKEVCSETVEDQSDCGSRK 354
KQDIADNLQDTVAFLSSDINEAHQQSALGQCGNFSFELDKEVCSETVEDQSDCGSRK
Sbjct: 264 QRRKQDIADNLQDTVAFLSSDINEAHQQSALGQCGNFSFELDKEVCSETVEDQSDCGSRK 323
Query: 355 RFRPELPAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLETAYFLTRSKL 414
RFRPELPAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLETAYFLTRSKL
Sbjct: 324 RFRPELPAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLETAYFLTRSKL 383
Query: 415 AKQVGNPVSSCHQVVKRTTGSPVVTEGSSIDDFALEGHYGTRQRGWMNSFLEGLCSYLSF 474
AKQVGNPVSSCHQVVKRTTGSPVVTEGSSIDDFALEGHYGTRQRGWMNSFLEGLCSYLSF
Sbjct: 384 AKQVGNPVSSCHQVVKRTTGSPVVTEGSSIDDFALEGHYGTRQRGWMNSFLEGLCSYLSF 443
Query: 475 SKLKVKAELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVF 519
SKLKVKAELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVF
Sbjct: 444 SKLKVKAELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVF 488
>Os05g0571000 Protein kinase-like domain containing protein
Length = 1144
Score = 302 bits (774), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 173/453 (38%), Positives = 251/453 (55%), Gaps = 39/453 (8%)
Query: 168 MELTWYTSPEEADDRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLRHRVLPPQL 227
+E +WY SPEE G S++Y LGVLLFELFC ET E AM++LRHR+LPP
Sbjct: 538 LEESWYRSPEEISQLKG-ILPSNIYSLGVLLFELFCCCETWEVHCAAMSDLRHRILPPNF 596
Query: 228 LLKWPKEASFCQLLMHPVPETRPKMSDVLQSEFLNRSRN-SXXXXXXXXXXXXXXXXXXX 286
L + PKEA FC L+HP P +RPK D+L + +N R+ S
Sbjct: 597 LSESPKEAGFCLWLLHPDPCSRPKARDILGCDLINEGRDLSLLDNKTPVAVNEEDTESGL 656
Query: 287 XXXXXXXXXXXKQDIADNLQDTVAFLSSDINEAHQQSALGQCGNFSFE-LDKEVCSETVE 345
K+ A L +A L +DI E ++ ++ FS E +D S +
Sbjct: 657 LLGFLSQLKEEKEMHAAKLSADLASLETDIAEVEKRHSMRM--GFSLEDMDVLAGSNDLS 714
Query: 346 DQSDCGSRKRFRPELPAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLET 405
S C L + SG PS L + S+ + R+M+N ++LE
Sbjct: 715 GASACA--------LGGASL----------SGLPPS--LCRSSIYEE--RVMRNLEQLEN 752
Query: 406 AYFLTRSKLAKQVGNPVSSCHQVVKRTTGS--PVVTEGSSIDDFALEGHYGTRQRGWMNS 463
AY+ RS + N + R + + ++ ++ID+ A GW
Sbjct: 753 AYYSMRSTIDTSEANIIKRVDNDALRVRQNFHELHSDANAIDEQA-------DPLGW--- 802
Query: 464 FLEGLCSYLSFSKLKVKAELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVFEYNM 523
F +GLC Y +S+ +V+ LK D+LNS N++CS+ FDRD+E+FA AGV+KKIK+FE++
Sbjct: 803 FFDGLCKYARYSRFEVRGILKNADILNSPNVICSLSFDRDEEYFAAAGVSKKIKIFEFDA 862
Query: 524 IVNEHCDIHYPVVEMSNRSKLSCICWNSYMKSHIASSDFEGIVQVWDVTRSQVFVEMREH 583
++N+ DIHYP++EM ++SKLSC+CWNSY+K+++AS+D++G VQ+WD + Q F + EH
Sbjct: 863 LLNDRVDIHYPLIEMPSKSKLSCVCWNSYIKNYLASTDYDGTVQLWDASSGQGFTQFTEH 922
Query: 584 ERRVWSVDFSLADPTKLVSGSDDGSVKLWNMNQ 616
+R WSV FS DPTKL SGSDD VK+W++NQ
Sbjct: 923 RKRAWSVSFSEVDPTKLASGSDDCCVKVWSINQ 955
>Os02g0771100 Similar to COP1 (Fragment)
Length = 685
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 147/249 (59%), Gaps = 25/249 (10%)
Query: 368 QNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLETAYFLTRSKLAKQVGNPVSSCHQ 427
Q R + CS PS+ + +V+++ R+ F +L+ Y+L R
Sbjct: 282 QRRDVLTCSDP-PSAPIQSGNVIARKRRVQAQFNELQE-YYLQR---------------- 323
Query: 428 VVKRTTGSPVVTEGSSIDDFALEGHYGTRQRGWMNSFLEGLCSYLSFSKLKVKAELKQCD 487
+RT E I EG++ + F L ++ +S+L+V AEL+ D
Sbjct: 324 --RRTGAQSRRLEERDIVTINKEGYHAG-----LEDFQSVLTTFTRYSRLRVIAELRHGD 376
Query: 488 LLNSSNLVCSVGFDRDKEFFATAGVNKKIKVFEYNMIVNEHCDIHYPVVEMSNRSKLSCI 547
L +S+N+V S+ FDRD E FATAGV+K+IKVFE++ +VNE D+H PVVEM+ RSKLSC+
Sbjct: 377 LFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFSTVVNEPSDVHCPVVEMATRSKLSCL 436
Query: 548 CWNSYMKSHIASSDFEGIVQVWDVTRSQVFVEMREHERRVWSVDFSLADPTKLVSGSDDG 607
WN Y K+ IASSD+EGIV VWDV Q +E EHE+R WSVDFS +P+ LVSGSDD
Sbjct: 437 SWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 496
Query: 608 SVKLWNMNQ 616
VK+W Q
Sbjct: 497 KVKVWCTKQ 505
>Os08g0295201
Length = 98
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 39/50 (78%), Gaps = 5/50 (10%)
Query: 65 GRAVEAPECLHVFRQVAESVAIAHAQGVAVGSARPSCFVVSPPFARVAFI 114
G AVE P+CLHVF QVAESVAIAHAQ V PSCF++ PPFARVAFI
Sbjct: 31 GWAVETPKCLHVFPQVAESVAIAHAQAVC-----PSCFIMLPPFARVAFI 75
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,363,310
Number of extensions: 649427
Number of successful extensions: 2883
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2877
Number of HSP's successfully gapped: 6
Length of query: 628
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 521
Effective length of database: 11,448,903
Effective search space: 5964878463
Effective search space used: 5964878463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)