BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0723100 Os01g0723100|AK059087
(389 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0723100 Senescence-associated family protein 594 e-170
Os06g0717100 Senescence-associated family protein 172 4e-43
Os03g0241900 Similar to Senescence-associated protein 12 128 9e-30
>Os01g0723100 Senescence-associated family protein
Length = 389
Score = 594 bits (1532), Expect = e-170, Method: Compositional matrix adjust.
Identities = 306/389 (78%), Positives = 306/389 (78%)
Query: 1 MGCCGGMSSTSRAPRGIREETLLRVPGASVHLLDGAEGPVELARGDLAVVRIAKDXXXXX 60
MGCCGGMSSTSRAPRGIREETLLRVPGASVHLLDGAEGPVELARGDLAVVRIAKD
Sbjct: 1 MGCCGGMSSTSRAPRGIREETLLRVPGASVHLLDGAEGPVELARGDLAVVRIAKDGVAVA 60
Query: 61 XXXXXXXXXXWPITRDEPVVRLDRLHYLFTLPDSTXXXXXXXXXALFLNYGVSFXXXXXX 120
WPITRDEPVVRLDRLHYLFTLPDST ALFLNYGVSF
Sbjct: 61 TVARVGRGLGWPITRDEPVVRLDRLHYLFTLPDSTGGGGGGGGGALFLNYGVSFAAPDDA 120
Query: 121 XXXXXXXXXXXNACFXXXXXXXXXXXXXXXXXXXXXXXXXXXDGYWNDFAPRMDSYNNVL 180
NACF DGYWNDFAPRMDSYNNVL
Sbjct: 121 LLASLDAFLKANACFSTPSSPAPSRSSATTTTRPAPTTTATADGYWNDFAPRMDSYNNVL 180
Query: 181 AKAIAAGTGQLVRGIFMCSEAYATQVQRGADLIRPQATGSVTKXXXXXXXXXXXXXXXQP 240
AKAIAAGTGQLVRGIFMCSEAYATQVQRGADLIRPQATGSVTK QP
Sbjct: 181 AKAIAAGTGQLVRGIFMCSEAYATQVQRGADLIRPQATGSVTKRSGGAGGGGASRTTGQP 240
Query: 241 DAKRGGVNKSLKRVRKLSEMTEKMSQSLLDTVIAVTGSMAAPLLRSKQGKAFLATVPGEV 300
DAKRGGVNKSLKRVRKLSEMTEKMSQSLLDTVIAVTGSMAAPLLRSKQGKAFLATVPGEV
Sbjct: 241 DAKRGGVNKSLKRVRKLSEMTEKMSQSLLDTVIAVTGSMAAPLLRSKQGKAFLATVPGEV 300
Query: 301 ILASLDAINKVMDAVEAAERRSLAATSNVVSGAVSRRYGESAGEATEDAFATAGHAVGTA 360
ILASLDAINKVMDAVEAAERRSLAATSNVVSGAVSRRYGESAGEATEDAFATAGHAVGTA
Sbjct: 301 ILASLDAINKVMDAVEAAERRSLAATSNVVSGAVSRRYGESAGEATEDAFATAGHAVGTA 360
Query: 361 WNLFKIRKAVTPSSSLPGNMVKSAVRNRK 389
WNLFKIRKAVTPSSSLPGNMVKSAVRNRK
Sbjct: 361 WNLFKIRKAVTPSSSLPGNMVKSAVRNRK 389
>Os06g0717100 Senescence-associated family protein
Length = 419
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/373 (30%), Positives = 171/373 (45%), Gaps = 41/373 (10%)
Query: 19 EETLLRVPGASVHLLDGAEGPVELARGDLAVVRIAKDXXXXXXXXXXXXXXXWPITRDEP 78
E+ LLR+PGA +HL+D LA GDL+++RI + WP+ RD
Sbjct: 71 EDVLLRIPGAQLHLIDRHRS-YPLAAGDLSLLRI-RSGDTSLAAIALLHPIQWPLARDVA 128
Query: 79 VVRLDRLHYLFTLPDSTXXXXXXXXXALFLNYGVSFXXXXXXXXXXXXXXXXXNACFXXX 138
V+LD HY F+L T L+YG++ +
Sbjct: 129 SVKLDPCHYSFSL---TVPPSADDPNPGPLHYGLTLSHPDPRL----------DGILATY 175
Query: 139 XXXXXXXXXXXXXXXXXXXXXXXXDGYWNDFAPRMDSYNNVLAKAIAAGTGQLVRGIFMC 198
YW AP ++ Y +A AIA G G L +GI C
Sbjct: 176 TSFSVQSVVGGEALASKVRDEVEAAAYWTAVAPNVEEYGGKVANAIATGAGHLAKGILWC 235
Query: 199 SEAYATQVQRGADLIRPQATGSVTKXXXXXXXXXXXXXXXQPDAKRGGVN----KSLKRV 254
SE +++ G ++++ + QP V+ + +KRV
Sbjct: 236 SELTVDRLRWGNEVLKRR---------------------MQPGDADAEVSPEMLRRIKRV 274
Query: 255 RKLSEMTEKMSQSLLDTVIAVTGSMAAPLLRSKQGKAFLATVPGEVILASLDAINKVMDA 314
+ +++M+EK++ +L V+ VTG + SK GK F +PGE++LASLD K+ DA
Sbjct: 275 KMVTKMSEKVATGILSGVVKVTGYFTNSIANSKAGKKFFNLLPGEIVLASLDGFGKICDA 334
Query: 315 VEAAERRSLAATSNVVSGAVSRRYGESAGEATEDAFATAGHAVGTAWNLFKIRKAVTPSS 374
VE A L+ +S V +G VS +YGE A AT + AGHA+GTAW +FKIR+A+ P S
Sbjct: 335 VEVAGTNVLSTSSTVTTGLVSHKYGEKAAAATNEGMDAAGHAIGTAWAVFKIRQALNPKS 394
Query: 375 SL-PGNMVKSAVR 386
L P ++ KS ++
Sbjct: 395 VLKPTSLAKSTIK 407
>Os03g0241900 Similar to Senescence-associated protein 12
Length = 482
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 120/212 (56%), Gaps = 17/212 (8%)
Query: 165 YWNDFAPRMDSYNNVLAKAIAAGTGQLVRGIFMCSEAYATQVQRGADLIRPQATGSVTKX 224
+W AP +D Y++ +A+ IA G+GQLVRGI C + A ++ G +++ S
Sbjct: 264 FWTTIAPNVDDYSSSVARLIARGSGQLVRGIIWCGDITAEGLRCGEAVVKKSVGPS---- 319
Query: 225 XXXXXXXXXXXXXXQPDAKRGGVNKSLKRVRKLSEMTEKMSQSLLDTVIAVTGSMAAPLL 284
+P + + +KR R++++M+ +++ S+L V+ V+G + + +L
Sbjct: 320 -------------GKPSQVKPSTIRRMKRARRVTKMSNRVANSILSGVLKVSGFVTSTVL 366
Query: 285 RSKQGKAFLATVPGEVILASLDAINKVMDAVEAAERRSLAATSNVVSGAVSRRYGESAGE 344
SK + F + GEVILASLD KV DAVE + + + +S V + V+ RYG+ AG+
Sbjct: 367 NSKPAQKFFKLMLGEVILASLDGFGKVWDAVEVSGKNVMRTSSVVTTSVVTHRYGDQAGQ 426
Query: 345 ATEDAFATAGHAVGTAWNLFKIRKAVTPSSSL 376
T+D +G+A+G AW +FKIRKA+ P +L
Sbjct: 427 VTQDYLHASGNALGVAWAVFKIRKALDPKGNL 458
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,117,062
Number of extensions: 282453
Number of successful extensions: 866
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 3
Length of query: 389
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 286
Effective length of database: 11,657,759
Effective search space: 3334119074
Effective search space used: 3334119074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)