BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0639600 Os01g0639600|AK067056
(248 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0639600 Protein of unknown function DUF1645 family pro... 353 4e-98
Os05g0578100 Protein of unknown function DUF1645 family pro... 150 8e-37
Os05g0188200 79 5e-15
Os05g0568600 Protein of unknown function DUF1645 family pro... 67 1e-11
>Os01g0639600 Protein of unknown function DUF1645 family protein
Length = 248
Score = 353 bits (907), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 185/248 (74%), Positives = 185/248 (74%)
Query: 1 MEERPRDRTVEEAAAFSGDESDGEFEFPFVSRETDAGGVADELFADGRIRAFYPVFGRVL 60
MEERPRDRTVEEAAAFSGDESDGEFEFPFVSRETDAGGVADELFADGRIRAFYPVFGRVL
Sbjct: 1 MEERPRDRTVEEAAAFSGDESDGEFEFPFVSRETDAGGVADELFADGRIRAFYPVFGRVL 60
Query: 61 DDVAVTXXXXXXXXXXXXLGRLFLEEGRXXXXXXXXXXXXXXDIAELDGVSPDSYCVWVX 120
DDVAVT LGRLFLEEGR DIAELDGVSPDSYCVWV
Sbjct: 61 DDVAVTPAAAAAEERRPPLGRLFLEEGRTSSVGSTSSSSSSTDIAELDGVSPDSYCVWVP 120
Query: 121 XXXXXXXXXXXXXXXXXXXXIARWRRISELVVGRSHSDGKEKFRFLSAPSSPARDHXXXX 180
IARWRRISELVVGRSHSDGKEKFRFLSAPSSPARDH
Sbjct: 121 GSSPASSPSRPPRKSGSTGSIARWRRISELVVGRSHSDGKEKFRFLSAPSSPARDHPKPK 180
Query: 181 XXXXXXXXXXXXLHTELDTIAAGHRLSYSPNHKAHGGATRRTFLPYRQDLMGIFANVNGL 240
LHTELDTIAAGHRLSYSPNHKAHGGATRRTFLPYRQDLMGIFANVNGL
Sbjct: 181 PTTKGGAAAATKLHTELDTIAAGHRLSYSPNHKAHGGATRRTFLPYRQDLMGIFANVNGL 240
Query: 241 SRTHHRPF 248
SRTHHRPF
Sbjct: 241 SRTHHRPF 248
>Os05g0578100 Protein of unknown function DUF1645 family protein
Length = 306
Score = 150 bits (379), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 145/310 (46%), Gaps = 66/310 (21%)
Query: 1 MEER---PRDRTVEEAA------AFSGD----------ESDGEFEF--PFVSRETDAG-- 37
MEER P+D T + AA A S D +SDGEFEF PFVSR++ AG
Sbjct: 1 MEERIPEPQDPTADVAADVLPAEASSSDVTTTGVEEESDSDGEFEFEFPFVSRDSPAGTA 60
Query: 38 GVADELFADGRIRAFYPVFGR-------------VLDDVAVTXXXXXXXXXXXXLGRLFL 84
VAD+LFADGRI+ FYPVFGR DD A T LGRLFL
Sbjct: 61 AVADDLFADGRIKPFYPVFGRAGAGGGGDRQQHLAKDDAAATVPPRTRGP----LGRLFL 116
Query: 85 EEGRXX-------XXXXXXXXXXXXDIAELDGVSPDSYCVWVXXXXXXXXXXXXXX---- 133
EE R D LDG P+SYC+W
Sbjct: 117 EESRGSFDRWSTSTSSSSSSSAPASDEGGLDGAPPESYCLWTPGAGAGSASASASPRPPR 176
Query: 134 XXXXXXXIARWRRISELVVGRSHSDGKEKFRFLSAPSSPARDH---------XXXXXXXX 184
+ARWRRISELVVGRSHSDGKEKF FL P ++++
Sbjct: 177 KSGSTGSMARWRRISELVVGRSHSDGKEKFLFLPIPPPSSKENDVEHFKPKPKPPKPTPA 236
Query: 185 XXXXXXXXLHTELDTIAAGHRLSYSPNHKAHGGAT------RRTFLPYRQDLMGIFANVN 238
E+DT+AA HR++Y G + RRTFLPYR++L+G+FANVN
Sbjct: 237 SGRKTAQAAAAEIDTVAAIHRIAYGAKGGGATGTSAGGGTPRRTFLPYREELVGLFANVN 296
Query: 239 GLSRTHHRPF 248
G+SR+H PF
Sbjct: 297 GISRSHPHPF 306
>Os05g0188200
Length = 193
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 43/67 (64%)
Query: 110 VSPDSYCVWVXXXXXXXXXXXXXXXXXXXXXIARWRRISELVVGRSHSDGKEKFRFLSAP 169
+SPDSYC+WV I RWRRISELV+GRSHSDGKEKFRF+SA
Sbjct: 1 MSPDSYCIWVSSPSPASSPSRPPRKSGSTGSITRWRRISELVIGRSHSDGKEKFRFISAL 60
Query: 170 SSPARDH 176
SS AR+H
Sbjct: 61 SSLAREH 67
>Os05g0568600 Protein of unknown function DUF1645 family protein
Length = 231
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 83/210 (39%), Gaps = 25/210 (11%)
Query: 43 LFADGRIRAF-YPVFGRVLDDVAVTXXXXX-XXXXXXXLGRLFLEEGRXXXXXXXXXXXX 100
+ GRI A YPVFGR V LG+L LEE
Sbjct: 43 VVGGGRIGAVVYPVFGRPRSPPPVQEVEEPDTATVRVPLGQLLLEE----RASAPPSGEQ 98
Query: 101 XXDIAELDGVSPDSYCVWV--XXXXXXXXXXXXXXXXXXXXXIARWRRISELVVGRSHSD 158
+ LDGV ++YC+W + RWR + ++GRSHSD
Sbjct: 99 ADEDGVLDGVPAETYCLWSPGSPAPAVSNSPARCQKSGSTGSVLRWR---QRLIGRSHSD 155
Query: 159 GKEKFRFLSAPSSPARDHXXXXXXXXXXXXXXXXLHTELDTIAAGHRLSYSPNHKAHGGA 218
GKEKF FLS+ S + D G Y + +GG
Sbjct: 156 GKEKFVFLSSGSD-------------VRSKGRTTTTSRGDAGGRGGGWRYYASGGGNGGG 202
Query: 219 TRRTFLPYRQDLMGIFANVNGLSRTHHRPF 248
R +FLPY+QDL+G+FAN R++H PF
Sbjct: 203 RRPSFLPYKQDLVGLFANAGAFRRSYH-PF 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,931,766
Number of extensions: 224509
Number of successful extensions: 420
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 5
Length of query: 248
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 150
Effective length of database: 11,918,829
Effective search space: 1787824350
Effective search space used: 1787824350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)