BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0618000 Os01g0618000|AK064632
         (304 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0618000  Exonuclease domain containing protein               503   e-143
Os01g0280000  Exonuclease domain containing protein               256   2e-68
Os11g0525900  Exonuclease domain containing protein               244   7e-65

>Os01g0618000 Exonuclease domain containing protein
          Length = 304

 Score =  503 bits (1295), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/279 (91%), Positives = 254/279 (91%)

Query: 26  EFDHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFC 85
           EFDHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFC
Sbjct: 26  EFDHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFC 85

Query: 86  RELTGIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRF 145
           RELTGIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRF
Sbjct: 86  RELTGIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRF 145

Query: 146 KGIAKPAYFDRWVDLRVHFEAAFGGGGQRVKLQEAVRAAGLEWVGRLHCGLDDACNTARL 205
           KGIAKPAYFDRWVDLRVHFEAAFGGGGQRVKLQEAVRAAGLEWVGRLHCGLDDACNTARL
Sbjct: 146 KGIAKPAYFDRWVDLRVHFEAAFGGGGQRVKLQEAVRAAGLEWVGRLHCGLDDACNTARL 205

Query: 206 LVELLRRGVPISITGSLPAAPPPLEXXXXXXXXXXXXXLLVPXXXXXXXXXXXXSTGGVM 265
           LVELLRRGVPISITGSLPAAPPPLE             LLVP            STGGVM
Sbjct: 206 LVELLRRGVPISITGSLPAAPPPLEQARKQQQQQEMQQLLVPCGAAVCCYCGVASTGGVM 265

Query: 266 AMPGSTQRRCFYGCGNWTAVSGATCPFFLMGGVVDCPIN 304
           AMPGSTQRRCFYGCGNWTAVSGATCPFFLMGGVVDCPIN
Sbjct: 266 AMPGSTQRRCFYGCGNWTAVSGATCPFFLMGGVVDCPIN 304



>Os01g0280000 Exonuclease domain containing protein
          Length = 411

 Score =  256 bits (653), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/289 (47%), Positives = 171/289 (59%), Gaps = 24/289 (8%)

Query: 26  EFDHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFC 85
           EF +FVV+DFEATC++    +PQEIIEFP+VLV++ATG+L ++F+ YVRP ++  LTDFC
Sbjct: 124 EFQYFVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLTDFC 183

Query: 86  RELTGIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRF 145
           +ELTGI Q  VD GV L+EALL HD+WL   G+      FAVVTW + DCR MLE ECR 
Sbjct: 184 KELTGIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKN--FAVVTWSNWDCRVMLESECRL 241

Query: 146 KGIAKPAYFDRWVDLRVHFEAAFGGGGQRVKLQEAVRAAGLEWVGRLHCGLDDACNTARL 205
           K I KP YF+RW++L+V F+  FGG   R  L+EAV+ +GL W GR HCGLDDA NTARL
Sbjct: 242 KRIRKPPYFNRWINLKVPFQEVFGGV--RCNLKEAVQLSGLTWEGRAHCGLDDARNTARL 299

Query: 206 LVELLRRGVPISITGSL--------------PAAPPPLEXXXXXXXXXXXXXLLVPXXXX 251
           L  L+ RG   SIT SL              PA  P                + V     
Sbjct: 300 LALLMHRGFKFSITNSLVWQSAPQSITCQSSPAHSPYPNQSHHKPMEVMGSPVQVNPYAG 359

Query: 252 XXXXXXXXSTGGVMAM------PGSTQRRCFYGCGNWTAVSGATCPFFL 294
                      GV++       PG    R FYGCGNWT+  GA C +++
Sbjct: 360 ITVKKPMYCHCGVLSQIKVTYRPGPMHGRYFYGCGNWTSTRGANCDYWV 408



>Os11g0525900 Exonuclease domain containing protein
          Length = 319

 Score =  244 bits (622), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 158/288 (54%), Positives = 178/288 (61%), Gaps = 19/288 (6%)

Query: 26  EFDHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATG-RLVSAFRAYVRPRHHPRLTDF 84
           EF +FVV+D EATCERGRRIYPQEIIEF +V+VD ATG +L  AFRAYVRP HH  LTD+
Sbjct: 19  EFAYFVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAYVRPLHHRELTDY 78

Query: 85  CRELTGIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGG------GRFAVVTWGDADCRTM 138
           CRELTGIAQ DVDAGV L EAL  HD WL A GV          G FAVVTWGD DCRTM
Sbjct: 79  CRELTGIAQADVDAGVDLREALRAHDAWLDARGVKNAAGGGGGGGGFAVVTWGDWDCRTM 138

Query: 139 LEQECRFKGI---AKPAYFDRWVDLRVHFEAAFG-GGGQRVKLQEAVRAAGLEWVGRLHC 194
           LE ECRFKGI    KP YFDRW++L+V F   F  GG +R+ L+EA+  AGL + GR H 
Sbjct: 139 LEGECRFKGIIGDGKPEYFDRWINLKVPFRQVFDRGGARRIGLEEALAVAGLAFEGRPHS 198

Query: 195 GLDDACNTARLLVELLRR--GVPISITGSLPAAPPPLEXXXXXXXXXXXXXLLVPXXXXX 252
           GLDDA NTARLL  L+RR  GV ++ITGSLP  P P                        
Sbjct: 199 GLDDARNTARLLALLMRRRGGVRLAITGSLPPPPRPPSQLVAIGASAAATPAAAAPGVGG 258

Query: 253 XXXXX------XXSTGGVMAMPGSTQRRCFYGCGNWTAVSGATCPFFL 294
                        S  GV   PG TQ R F+GCG WT   GA C +F+
Sbjct: 259 GGARVHYCQCGVASRVGVARRPGPTQGRRFFGCGRWTPARGAVCSYFV 306



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.143    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,194,928
Number of extensions: 419827
Number of successful extensions: 1475
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1466
Number of HSP's successfully gapped: 3
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)