Os01g0280000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exonuclease domain containing protein.
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Os01g0280000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.48 | 0.137 | 11.5 | -0.183 | 0.276 | 0.424 | -0.0213 | 0.135 | 0.0624 | 4.12 | 20.22 | 1479 | -- | -- |
| 8.49 | 0.136 | 11.5 | -0.203 | 0.278 | 0.393 | -0.0162 | -- | 0.0548 | 4.08 | 20.5 | 1519 | -- | -- |
| 8.47 | 0.136 | 11.5 | -0.184 | 0.277 | 0.42 | -- | 0.127 | 0.0614 | 4.11 | 20.36 | 1486 | -- | -- |
| 8.49 | 0.136 | 11.5 | -0.204 | 0.278 | 0.391 | -- | -- | 0.0552 | 4.09 | 20.53 | 1516 | -- | -- |
| 12.36 | 0.164 | 11.5 | -0.18 | -- | 0.423 | -- | 0.0985 | 0.0657 | -- | 20.47 | 1271 | -- | -- |
| 11.81 | 0.161 | 11.5 | -0.0424 | 0.286 | -- | -0.0628 | -- | 0.144 | 4.1 | -- | -- | -- | -- |
| 11.82 | 0.161 | 11.5 | -0.0417 | 0.285 | -- | -- | -- | 0.144 | 4.08 | -- | -- | -- | -- |
| 12.24 | 0.163 | 11.5 | -0.184 | -- | 0.376 | -- | -- | 0.0545 | -- | 21.3 | 1234 | -- | -- |
| 9.24 | 0.142 | 11.5 | -- | 0.262 | 0.292 | -- | -- | 0.0735 | 3.95 | 21.2 | 1326 | -- | -- |
| 16.25 | 0.188 | 11.5 | -0.0301 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 11.87 | 0.161 | 11.5 | -- | 0.284 | -- | -- | -- | 0.149 | 4.09 | -- | -- | -- | -- |
| 12.98 | 0.168 | 11.5 | -- | -- | 0.308 | -- | -- | 0.0826 | -- | 21.3 | 1204 | -- | -- |
| 16.27 | 0.188 | 11.5 | -- | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 3 | 8.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 10 | 8.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 11 | 8.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 15 | 8.31 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 39 | 8.33 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 74 | 8.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 106 | 8.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 140 | 8.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 156 | 8.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 288 | 8.44 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 323 | 8.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 374 | 8.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 384 | 8.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 409 | 8.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 418 | 8.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 486 | 8.51 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 501 | 8.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 518 | 8.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 565 | 8.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 598 | 8.54 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 607 | 8.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 688 | 8.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 702 | 8.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 760 | 8.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 936 | 8.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |