BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0280000 Os01g0280000|AK103348
         (411 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0280000  Exonuclease domain containing protein               864   0.0  
Os01g0618000  Exonuclease domain containing protein               272   3e-73
Os11g0525900  Exonuclease domain containing protein               270   2e-72
Os11g0526100                                                       74   2e-13

>Os01g0280000 Exonuclease domain containing protein
          Length = 411

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/411 (100%), Positives = 411/411 (100%)

Query: 1   MQVNKEAPLGCLKPISQYNLQEQRSNGFPENSEKKNDSIATERVLEASPLPNQGFFRPVQ 60
           MQVNKEAPLGCLKPISQYNLQEQRSNGFPENSEKKNDSIATERVLEASPLPNQGFFRPVQ
Sbjct: 1   MQVNKEAPLGCLKPISQYNLQEQRSNGFPENSEKKNDSIATERVLEASPLPNQGFFRPVQ 60

Query: 61  RTEYYAYPFIYADYQMPGQPQPYNLDNQFYQINRDHSFPIESRVQYLPFKMPPQGYPPDA 120
           RTEYYAYPFIYADYQMPGQPQPYNLDNQFYQINRDHSFPIESRVQYLPFKMPPQGYPPDA
Sbjct: 61  RTEYYAYPFIYADYQMPGQPQPYNLDNQFYQINRDHSFPIESRVQYLPFKMPPQGYPPDA 120

Query: 121 QLQEFQYFVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLT 180
           QLQEFQYFVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLT
Sbjct: 121 QLQEFQYFVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLT 180

Query: 181 DFCKELTGIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKNFAVVTWSNWDCRVMLESECR 240
           DFCKELTGIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKNFAVVTWSNWDCRVMLESECR
Sbjct: 181 DFCKELTGIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKNFAVVTWSNWDCRVMLESECR 240

Query: 241 LKRIRKPPYFNRWINLKVPFQEVFGGVRCNLKEAVQLSGLTWEGRAHCGLDDARNTARLL 300
           LKRIRKPPYFNRWINLKVPFQEVFGGVRCNLKEAVQLSGLTWEGRAHCGLDDARNTARLL
Sbjct: 241 LKRIRKPPYFNRWINLKVPFQEVFGGVRCNLKEAVQLSGLTWEGRAHCGLDDARNTARLL 300

Query: 301 ALLMHRGFKFSITNSLVWQSAPQSITCQSSPAHSPYPNQSHHKPMEVMGSPVQVNPYAGI 360
           ALLMHRGFKFSITNSLVWQSAPQSITCQSSPAHSPYPNQSHHKPMEVMGSPVQVNPYAGI
Sbjct: 301 ALLMHRGFKFSITNSLVWQSAPQSITCQSSPAHSPYPNQSHHKPMEVMGSPVQVNPYAGI 360

Query: 361 TVKKPMYCHCGVLSQIKVTYRPGPMHGRYFYGCGNWTSTRGANCDYWVWLS 411
           TVKKPMYCHCGVLSQIKVTYRPGPMHGRYFYGCGNWTSTRGANCDYWVWLS
Sbjct: 361 TVKKPMYCHCGVLSQIKVTYRPGPMHGRYFYGCGNWTSTRGANCDYWVWLS 411



>Os01g0618000 Exonuclease domain containing protein
          Length = 304

 Score =  272 bits (696), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/289 (49%), Positives = 180/289 (62%), Gaps = 24/289 (8%)

Query: 124 EFQYFVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLTDFC 183
           EF +FVV+DFEATC++    +PQEIIEFP+VLV++ATG+L ++F+ YVRP ++  LTDFC
Sbjct: 26  EFDHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFC 85

Query: 184 KELTGIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKN--FAVVTWSNWDCRVMLESECRL 241
           +ELTGI Q  VD GV L+EALL HD+WL   G+      FAVVTW + DCR MLE ECR 
Sbjct: 86  RELTGIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRF 145

Query: 242 KRIRKPPYFNRWINLKVPFQEVFGGV--RCNLKEAVQLSGLTWEGRAHCGLDDARNTARL 299
           K I KP YF+RW++L+V F+  FGG   R  L+EAV+ +GL W GR HCGLDDA NTARL
Sbjct: 146 KGIAKPAYFDRWVDLRVHFEAAFGGGGQRVKLQEAVRAAGLEWVGRLHCGLDDACNTARL 205

Query: 300 LALLMHRGFKFSITNSLVWQSAPQSITCQSSPAHSPYPNQSHHKPMEVMGSPVQVNPYAG 359
           L  L+ RG   SIT SL              PA  P   Q+  +  +     + V   A 
Sbjct: 206 LVELLRRGVPISITGSL--------------PAAPPPLEQARKQQQQQEMQQLLVPCGAA 251

Query: 360 ITVKKPMYCHCGVLSQIKVTYRPGPMHGRYFYGCGNWTSTRGANCDYWV 408
           +       C+CGV S   V   PG    R FYGCGNWT+  GA C +++
Sbjct: 252 VC------CYCGVASTGGVMAMPGSTQRRCFYGCGNWTAVSGATCPFFL 294



>Os11g0525900 Exonuclease domain containing protein
          Length = 319

 Score =  270 bits (689), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 154/306 (50%), Positives = 189/306 (61%), Gaps = 31/306 (10%)

Query: 121 QLQEFQYFVVIDFEATCDKENNPHPQEIIEFPSVLVNSATG-QLEASFQTYVRPAYNQLL 179
           QLQEF YFVVID EATC++    +PQEIIEF SV+V+ ATG QL  +F+ YVRP +++ L
Sbjct: 16  QLQEFAYFVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAYVRPLHHREL 75

Query: 180 TDFCKELTGIQQIQVDRGVPLSEALLMHDKWLEEKGIKHK--------NFAVVTWSNWDC 231
           TD+C+ELTGI Q  VD GV L EAL  HD WL+ +G+K+          FAVVTW +WDC
Sbjct: 76  TDYCRELTGIAQADVDAGVDLREALRAHDAWLDARGVKNAAGGGGGGGGFAVVTWGDWDC 135

Query: 232 RVMLESECRLKRI---RKPPYFNRWINLKVPFQEVF---GGVRCNLKEAVQLSGLTWEGR 285
           R MLE ECR K I    KP YF+RWINLKVPF++VF   G  R  L+EA+ ++GL +EGR
Sbjct: 136 RTMLEGECRFKGIIGDGKPEYFDRWINLKVPFRQVFDRGGARRIGLEEALAVAGLAFEGR 195

Query: 286 AHCGLDDARNTARLLALLMHR--GFKFSITNSLVWQSAPQSITCQSSPAHSPYPNQSHHK 343
            H GLDDARNTARLLALLM R  G + +IT SL     P S       + +  P  +   
Sbjct: 196 PHSGLDDARNTARLLALLMRRRGGVRLAITGSLPPPPRPPSQLVAIGASAAATPAAAAPG 255

Query: 344 PMEVMGSPVQVNPYAGITVKKPMYCHCGVLSQIKVTYRPGPMHGRYFYGCGNWTSTRGAN 403
                               +  YC CGV S++ V  RPGP  GR F+GCG WT  RGA 
Sbjct: 256 VGG--------------GGARVHYCQCGVASRVGVARRPGPTQGRRFFGCGRWTPARGAV 301

Query: 404 CDYWVW 409
           C Y+VW
Sbjct: 302 CSYFVW 307



>Os11g0526100 
          Length = 130

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 64/136 (47%), Gaps = 28/136 (20%)

Query: 277 LSGLTWEGRAHCGL---DDARNTARLLALLMHRGFKFSITNSLVWQSAPQSITCQSSPAH 333
           ++ L ++GR H GL   DDARNTA    +L+ RG                  T  S P  
Sbjct: 1   MAWLPFDGRPHIGLVVYDDARNTA----VLVRRG----------------GFTAGSLPL- 39

Query: 334 SPYPNQSHHKPMEVMGSPVQVNPYAGITVKKPMYCHCGVLSQIKVTYRPGPMHGRYFYGC 393
            P P        E            G  V+   YCHCGV S+ K   RPGP  GR+F+GC
Sbjct: 40  -PLPAAQAAAAEEEGVVVGGGGGGGGARVR---YCHCGVESREKEVRRPGPTQGRHFFGC 95

Query: 394 GNWTSTRGANCDYWVW 409
           G WT+ RGA CDY+VW
Sbjct: 96  GRWTAARGAACDYYVW 111



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,827,793
Number of extensions: 696402
Number of successful extensions: 1353
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1345
Number of HSP's successfully gapped: 4
Length of query: 411
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 308
Effective length of database: 11,657,759
Effective search space: 3590589772
Effective search space used: 3590589772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)