Os11g0525900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exonuclease domain containing protein.
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Os11g0525900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.13 | 0.742 | 6.82 | 0.475 | 1.96 | -2.25 | -0.956 | -2.21 | 0.332 | 15.5 | 9.584 | 12 | -- | -- |
| 252.05 | 0.739 | 6.79 | 0.791 | 1.94 | -2.26 | -1.55 | -- | 0.415 | 15.4 | -12.22 | 15 | -- | -- |
| 251.14 | 0.738 | 6.84 | 0.344 | 1.98 | -2.29 | -- | -3.14 | 0.299 | 15.6 | 11.9 | 18 | -- | -- |
| 259.36 | 0.75 | 6.79 | 0.773 | 1.96 | -2.34 | -- | -- | 0.418 | 15.5 | 12.53 | 18 | -- | -- |
| 402.13 | 0.939 | 6.9 | -0.0788 | -- | -0.139 | -- | -2.73 | -0.0269 | -- | 9.827 | 2 | -- | -- |
| 301.23 | 0.814 | 6.86 | 0.342 | 1.34 | -- | -1.88 | -- | 0.0966 | 15.8 | -- | -- | -- | -- |
| 311.05 | 0.826 | 6.87 | 0.314 | 1.34 | -- | -- | -- | 0.0863 | 16.1 | -- | -- | -- | -- |
| 408.31 | 0.945 | 6.85 | 0.294 | -- | -0.192 | -- | -- | 0.0761 | -- | 12.53 | 18 | -- | -- |
| 273.59 | 0.77 | 6.82 | -- | 1.85 | -1.95 | -- | -- | 0.286 | 15.6 | 13.09 | 18 | -- | -- |
| 408.84 | 0.945 | 6.86 | 0.259 | -- | -- | -- | -- | 0.0505 | -- | -- | -- | -- | -- |
| 313.64 | 0.828 | 6.87 | -- | 1.33 | -- | -- | -- | 0.0513 | 16.1 | -- | -- | -- | -- |
| 410.46 | 0.947 | 6.86 | -- | -- | -0.101 | -- | -- | 0.0331 | -- | -4.704 | 4 | -- | -- |
| 410.62 | 0.946 | 6.87 | -- | -- | -- | -- | -- | 0.0218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 245.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 12 | 248.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 17 |
| 14 | 248.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 16 | 248.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 27 | 249.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 32 | 249.15 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 41 | 249.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 45 | 249.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 52 | 249.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 53 | 249.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 55 | 249.68 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 62 | 249.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 73 | 249.91 | temperature | 15 | 720 | > th | dose dependent | sin | 13 | NA |
| 78 | 250.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 80 | 250.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 83 | 250.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 87 | 250.18 | atmosphere | 995 | 10 | > th | dose dependent | sin | 17 | NA |
| 93 | 250.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 97 | 250.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 126 | 250.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 141 | 250.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 153 | 250.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 171 | 251.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 177 | 251.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 204 | 251.34 | atmosphere | 1015 | 10 | < th | dose dependent | sin | 16 | NA |
| 273 | 251.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 328 | 252.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 349 | 252.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 397 | 252.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 20 |
| 437 | 253.06 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 446 | 253.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 567 | 253.41 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 606 | 253.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 662 | 253.60 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 714 | 253.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |