Os01g0618000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exonuclease domain containing protein.
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Os01g0618000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.95 | 0.542 | 6.77 | -0.897 | 1.97 | 1 | 0.121 | -0.529 | -0.615 | 11.4 | 20.74 | 871 | -- | -- |
| 133.65 | 0.538 | 6.76 | -0.796 | 1.98 | 1.06 | 0.264 | -- | -0.594 | 11.4 | 20.7 | 854 | -- | -- |
| 133 | 0.537 | 6.77 | -0.903 | 1.97 | 0.999 | -- | -0.58 | -0.617 | 11.4 | 20.75 | 870 | -- | -- |
| 133.95 | 0.539 | 6.76 | -0.781 | 1.98 | 1.05 | -- | -- | -0.59 | 11.4 | 20.76 | 854 | -- | -- |
| 303.33 | 0.816 | 6.8 | -0.649 | -- | 1.18 | -- | 0.135 | -0.591 | -- | 20.75 | 1635 | -- | -- |
| 165.5 | 0.603 | 6.71 | -0.39 | 1.82 | -- | 0.373 | -- | -0.342 | 11.5 | -- | -- | -- | -- |
| 166.09 | 0.604 | 6.71 | -0.375 | 1.82 | -- | -- | -- | -0.34 | 11.5 | -- | -- | -- | -- |
| 303.44 | 0.815 | 6.8 | -0.678 | -- | 1.17 | -- | -- | -0.597 | -- | 20.8 | 1580 | -- | -- |
| 147.89 | 0.566 | 6.73 | -- | 1.95 | 0.793 | -- | -- | -0.463 | 11.4 | 20.95 | 797 | -- | -- |
| 372.99 | 0.902 | 6.75 | -0.424 | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
| 169.81 | 0.61 | 6.7 | -- | 1.82 | -- | -- | -- | -0.299 | 11.5 | -- | -- | -- | -- |
| 314.57 | 0.829 | 6.78 | -- | -- | 1.09 | -- | -- | -0.514 | -- | 20.95 | 797 | -- | -- |
| 377.73 | 0.907 | 6.74 | -- | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 5 | 123.39 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 21 |
| 6 | 123.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 12 | 125.32 | temperature | 15 | 10 | > th | dose dependent | sin | 6 | NA |
| 23 | 127.09 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 16 |
| 37 | 127.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 41 | 128.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 44 | 128.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 46 | 128.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 88 | 130.56 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 112 | 131.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 119 | 131.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 152 | 132.24 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 8 |
| 170 | 132.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 231 | 133.77 | temperature | 20 | 90 | < th | dose independent | rect. | 24 | 19 |
| 234 | 133.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 239 | 133.85 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 18 |
| 279 | 134.21 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 20 |
| 289 | 134.30 | temperature | 20 | 90 | > th | dose independent | sin | 5 | NA |
| 293 | 134.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 305 | 134.44 | temperature | 20 | 10 | > th | dose independent | sin | 5 | NA |
| 318 | 134.51 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 322 | 134.53 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 330 | 134.59 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 22 |
| 339 | 134.67 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 374 | 135.01 | wind | 9 | 14400 | < th | dose independent | rect. | 21 | 15 |
| 411 | 135.25 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 18 |
| 413 | 135.25 | temperature | 20 | 90 | < th | dose independent | rect. | 24 | 23 |
| 434 | 135.43 | wind | 9 | 14400 | > th | dose independent | rect. | 21 | 15 |
| 471 | 135.70 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 492 | 135.82 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 10 |
| 509 | 135.96 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 16 |
| 538 | 136.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 542 | 136.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 550 | 136.23 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 554 | 136.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 558 | 136.31 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 584 | 136.48 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 16 |
| 589 | 136.49 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 593 | 136.50 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 599 | 136.54 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 605 | 136.57 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 16 |
| 607 | 136.57 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 623 | 136.68 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 7 |
| 636 | 136.72 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 656 | 136.80 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 23 |
| 657 | 136.80 | temperature | 20 | 720 | < th | dose independent | rect. | 13 | 23 |
| 662 | 136.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 665 | 136.83 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 669 | 136.83 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 23 |
| 685 | 136.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 736 | 137.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 743 | 137.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 750 | 137.04 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 758 | 137.08 | temperature | 20 | 90 | > th | dose independent | sin | 2 | NA |
| 806 | 137.21 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 843 | 137.30 | radiation | 30 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 844 | 137.30 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 871 | 137.41 | wind | 7 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 881 | 137.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 921 | 137.53 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 926 | 137.53 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 932 | 137.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 941 | 137.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 980 | 137.63 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |
| 985 | 137.64 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 4 |