BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0618000 Os01g0618000|AK064632
         (304 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15140.1  | chr3:5099712-5101717 REVERSE LENGTH=338             74   8e-14

>AT3G15140.1 | chr3:5099712-5101717 REVERSE LENGTH=338
          Length = 337

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 23/206 (11%)

Query: 26  EFDHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPR--LTD 83
           EF+ F+V+D E   E         I+EFP ++VDA T  +V  F  +VRP       +  
Sbjct: 125 EFNFFLVIDLEGKVE---------ILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAINK 175

Query: 84  FCR----ELTGIAQGDVDAGVGLAEALLRHDEWLRAAGVVE-----GGGRFAVVTWGDAD 134
           +      EL G+ +   D  +   + +   + WL    + +     G    A VT G+ D
Sbjct: 176 YIEGKYGEL-GVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGNWD 234

Query: 135 CRTMLEQECRFKGIAKPAYFDRWVDLRVHFEAAFGGGGQRVKLQEAVRAAGLEWVGRLHC 194
            +T + ++C    I  P YF  W++L+  +   +G   +   +   +R  G++ +G  H 
Sbjct: 235 IKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREAR--GMVSMMRQCGIKLMGSHHL 292

Query: 195 GLDDACNTARLLVELLRRGVPISITG 220
           G+DD  N  R++  +L  G  + +T 
Sbjct: 293 GIDDTKNITRVVQRMLSEGAVLKLTA 318



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.143    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,780,564
Number of extensions: 212776
Number of successful extensions: 427
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 206
Effective length of database: 8,419,801
Effective search space: 1734479006
Effective search space used: 1734479006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)