BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0280000 Os01g0280000|AK103348
         (411 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15140.1  | chr3:5099712-5101717 REVERSE LENGTH=338             94   1e-19

>AT3G15140.1 | chr3:5099712-5101717 REVERSE LENGTH=338
          Length = 337

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 23/204 (11%)

Query: 123 QEFQYFVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRP------AYN 176
           QEF +F+VID E            EI+EFP ++V++ T ++   F  +VRP      A N
Sbjct: 124 QEFNFFLVIDLEGKV---------EILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAIN 174

Query: 177 QLLTDFCKELTGIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKNF-------AVVTWSNW 229
           + +     EL G+ ++  D  +P  + +   + WL E  +  K+        A VT  NW
Sbjct: 175 KYIEGKYGEL-GVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGNW 233

Query: 230 DCRVMLESECRLKRIRKPPYFNRWINLKVPFQEVFGGVRCNLKEAVQLSGLTWEGRAHCG 289
           D +  +  +C +  I  PPYF  WINLK  +   +G     +   ++  G+   G  H G
Sbjct: 234 DIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKLMGSHHLG 293

Query: 290 LDDARNTARLLALLMHRGFKFSIT 313
           +DD +N  R++  ++  G    +T
Sbjct: 294 IDDTKNITRVVQRMLSEGAVLKLT 317



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,123,397
Number of extensions: 451326
Number of successful extensions: 1036
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1034
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 310
Effective length of database: 8,337,553
Effective search space: 2584641430
Effective search space used: 2584641430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)