BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0592900 Os01g0592900|AK102072
         (876 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0592900  ATP-dependent helicase, DEAH-box family protein    1775   0.0  
Os09g0551800  ATP-dependent helicase, DEAH-box family protein     212   9e-55
Os05g0144800  Similar to TFIIH basal transcription factor co...   107   3e-23

>Os01g0592900 ATP-dependent helicase, DEAH-box family protein
          Length = 876

 Score = 1775 bits (4598), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 853/876 (97%), Positives = 853/876 (97%)

Query: 1   MAVLGSREQMCIHEEVSKLRGRQQNNACHYLCKKRWCRHHNSVAEFMRNNSELGSEACDI 60
           MAVLGSREQMCIHEEVSKLRGRQQNNACHYLCKKRWCRHHNSVAEFMRNNSELGSEACDI
Sbjct: 1   MAVLGSREQMCIHEEVSKLRGRQQNNACHYLCKKRWCRHHNSVAEFMRNNSELGSEACDI 60

Query: 61  EDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAH 120
           EDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAH
Sbjct: 61  EDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAH 120

Query: 121 NLESICADAASFDLLPNNLSSCIAEAQECIQLCSAKRTFENSADKQFDPENYAILKALLM 180
           NLESICADAASFDLLPNNLSSCIAEAQECIQLCSAKRTFENSADKQFDPENYAILKALLM
Sbjct: 121 NLESICADAASFDLLPNNLSSCIAEAQECIQLCSAKRTFENSADKQFDPENYAILKALLM 180

Query: 181 ALEKKISEVVIDSKELGHTKPGNYIYEFLSELNITSETSKKLIDTIDGASLLLEEGNSAE 240
           ALEKKISEVVIDSKELGHTKPGNYIYEFLSELNITSETSKKLIDTIDGASLLLEEGNSAE
Sbjct: 181 ALEKKISEVVIDSKELGHTKPGNYIYEFLSELNITSETSKKLIDTIDGASLLLEEGNSAE 240

Query: 241 TGPGMKAKATVCRLETIRDILDIIFRGGGQSHAKYYRFHVNECQQNSGDALKVLGKVSRT 300
           TGPGMKAKATVCRLETIRDILDIIFRGGGQSHAKYYRFHVNECQQNSGDALKVLGKVSRT
Sbjct: 241 TGPGMKAKATVCRLETIRDILDIIFRGGGQSHAKYYRFHVNECQQNSGDALKVLGKVSRT 300

Query: 301 LSWWCFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLALELNLEFPVRLENPHVIASDQIW 360
           LSWWCFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLALELNLEFPVRLENPHVIASDQIW
Sbjct: 301 LSWWCFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLALELNLEFPVRLENPHVIASDQIW 360

Query: 361 XXXXXXXXSGHPLNSSYRTRETLKYKQELGITIVNFARIVPDGLLVFFPSYSMMDKCINC 420
                   SGHPLNSSYRTRETLKYKQELGITIVNFARIVPDGLLVFFPSYSMMDKCINC
Sbjct: 361 VGVVPVGPSGHPLNSSYRTRETLKYKQELGITIVNFARIVPDGLLVFFPSYSMMDKCINC 420

Query: 421 WKDRNHENSSDEHTIWQRICKHKQPVIEPRQSSNFPNAIEDYAAKLRDSSTTGAIFFAVC 480
           WKDRNHENSSDEHTIWQRICKHKQPVIEPRQSSNFPNAIEDYAAKLRDSSTTGAIFFAVC
Sbjct: 421 WKDRNHENSSDEHTIWQRICKHKQPVIEPRQSSNFPNAIEDYAAKLRDSSTTGAIFFAVC 480

Query: 481 RGKVSEGLDFADRAGRAVIVTGMPFATPTDPKVRLKRDYLDKLGSASNKNSKALTGEEWY 540
           RGKVSEGLDFADRAGRAVIVTGMPFATPTDPKVRLKRDYLDKLGSASNKNSKALTGEEWY
Sbjct: 481 RGKVSEGLDFADRAGRAVIVTGMPFATPTDPKVRLKRDYLDKLGSASNKNSKALTGEEWY 540

Query: 541 XXXXXXXXXXXXXXXIRHRHDYGAIIYCDERFVWQNYQSQMSYWLRPYIKCYKKYGEVVQ 600
                          IRHRHDYGAIIYCDERFVWQNYQSQMSYWLRPYIKCYKKYGEVVQ
Sbjct: 541 VQQAARAVNQAVGRVIRHRHDYGAIIYCDERFVWQNYQSQMSYWLRPYIKCYKKYGEVVQ 600

Query: 601 GLTRFFRDKVSIDSSKPNETDFNDNIVLLADKHKPQETISALAVTTANENQRTALSVNPT 660
           GLTRFFRDKVSIDSSKPNETDFNDNIVLLADKHKPQETISALAVTTANENQRTALSVNPT
Sbjct: 601 GLTRFFRDKVSIDSSKPNETDFNDNIVLLADKHKPQETISALAVTTANENQRTALSVNPT 660

Query: 661 TKRSNYIKFAQITPANRSTLSMKHGCSSTSQLLYSGDKLSTDAQVIDLAADVATSHLAGY 720
           TKRSNYIKFAQITPANRSTLSMKHGCSSTSQLLYSGDKLSTDAQVIDLAADVATSHLAGY
Sbjct: 661 TKRSNYIKFAQITPANRSTLSMKHGCSSTSQLLYSGDKLSTDAQVIDLAADVATSHLAGY 720

Query: 721 RFKSLGPKKAKVMVGSKDVCFDDGSPKLQHNVESRALAGCLGEQSTASSKKSNITHAPGN 780
           RFKSLGPKKAKVMVGSKDVCFDDGSPKLQHNVESRALAGCLGEQSTASSKKSNITHAPGN
Sbjct: 721 RFKSLGPKKAKVMVGSKDVCFDDGSPKLQHNVESRALAGCLGEQSTASSKKSNITHAPGN 780

Query: 781 SGAIHEKSGGQESNAGPAFLKLAREKLSTAEYRDFVEYMKALKLKTMHIKDSLDAIAKLF 840
           SGAIHEKSGGQESNAGPAFLKLAREKLSTAEYRDFVEYMKALKLKTMHIKDSLDAIAKLF
Sbjct: 781 SGAIHEKSGGQESNAGPAFLKLAREKLSTAEYRDFVEYMKALKLKTMHIKDSLDAIAKLF 840

Query: 841 SSPERLPLLEGFRVFVPKNHLSLYEQLVQSYTVPNT 876
           SSPERLPLLEGFRVFVPKNHLSLYEQLVQSYTVPNT
Sbjct: 841 SSPERLPLLEGFRVFVPKNHLSLYEQLVQSYTVPNT 876



>Os09g0551800 ATP-dependent helicase, DEAH-box family protein
          Length = 1187

 Score =  212 bits (540), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 253/537 (47%), Gaps = 70/537 (13%)

Query: 1   MAVLGSREQMCIHEEVSKLRGRQQNNACHYLCKK------RWCRHHNSVAEFMRNNS-EL 53
           MA+L SR+  C+++ V        +     LCK       + C  + +  +  R+ S ++
Sbjct: 160 MAILASRKHYCVNKNVC------MSGNIDELCKSLLDDSAQGCPEYKNAQKLSRHPSLQI 213

Query: 54  GS--EACDIEDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDN 111
           G   E  DIEDLV +GR    CPY+ ++ ++++  ++F PYNYLI P  RR+++ I    
Sbjct: 214 GGCYEVHDIEDLVRVGRKVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMD-IDIRG 272

Query: 112 AVLIFDEAHNLESICADAASFDLLPNNLSSCIAEAQECIQLCSAKRTFENSADKQFDPEN 171
           ++++ DEAHN+E I  DA SFD+   +  S +   QE   L +     + +  K ++P  
Sbjct: 273 SIIVLDEAHNIEDIARDAGSFDV---DEESLLFLRQELEGLVT-----DEAVAKIYEP-- 322

Query: 172 YAILKALLMALEKKISEVVIDSKELGHTKPGNYIY--EFLSELNITSETSKKLIDTIDGA 229
              L  ++  L   I E   + ++     P ++    E + EL     T        + A
Sbjct: 323 ---LHEVIQGLNGWIDEQGNNLQKNEFEHPASFWTGEEAMKELKYAGITPVNFPVLQECA 379

Query: 230 SLLLEEGNSAETGPGMKAKATVCRLETIRDILDIIFRGGGQSHAKYYRFHVNECQQNSGD 289
           +  ++  + AE+     +  +   LE++   L   F   G+ H+  Y+  +    +  G+
Sbjct: 380 TKAIKAASDAESEGVHLSGGSAMTLESLFSSLSYFFAENGR-HSNDYQLALQRFAKREGN 438

Query: 290 ALKVLGKVSRTLSWWCFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLALELNLEFPVRLE 349
           ++         +S WC NP +   +   L + S+ILTSGTLSP+ S A EL ++F   +E
Sbjct: 439 SVTSFIGWKCVMSLWCLNPAVVFRDIADLTL-SVILTSGTLSPMGSFASELGVQFEACME 497

Query: 350 NPHVIASD-QIWXXXXXXXXSGHPLNSSYRTRETLKYKQELGITIVNFARIVPDGLLVFF 408
            PHVI +D Q++        +G  LN+SYRT     ++ ELG T+    R+VP G LVFF
Sbjct: 498 APHVINADSQVFATVLSSGPTGRRLNASYRTANEYSFQDELGATLEEICRVVPGGALVFF 557

Query: 409 PSYSMMDKCINCWKDRNHENSSDEHTIWQRICKHKQPVIEPRQSS--------NFPNAIE 460
           PSY++++K    W              W R+   K   +EPR S+         + NAI 
Sbjct: 558 PSYNLLEKLQRRWSQTGQ---------WARLEAQKHVCVEPRGSTEELEPVLKGYYNAIL 608

Query: 461 DYAAKLR-------------------DSSTTGAIFFAVCRGKVSEGLDFADRAGRAV 498
             A   +                   +S+  GA F AVCRGKVSEG+DF+D   R V
Sbjct: 609 GKAPPKKGRGGAKQIVKNRVTKDSSQESAKGGAAFLAVCRGKVSEGIDFSDDKARVV 665



>Os05g0144800 Similar to TFIIH basal transcription factor complex helicase
           subunit (EC 3.6.1.-) (DNA-repair protein complementing
           XP-D cells) (Xeroderma pigmentosum group D complementing
           protein) (CXPD) (DNA excision repair protein ERCC-2)
          Length = 758

 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 20/281 (7%)

Query: 305 CFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLALELNLEFPVRLENPHVIASDQIWXXXX 364
           C +  LA++   +   +++++TSGTLSP+D     LN    +       +  D I     
Sbjct: 440 CHDASLAIQPVFE-RFQTVVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVL 498

Query: 365 XXXXSGHPLNSSYRTRETLKYKQELGITIVNFARIVPDGLLVFFPSYSMMDKCINCWKDR 424
                  P+++ +  R      +  G  ++  A  VPDG++ FF SYS MD  +N W   
Sbjct: 499 TRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMDGIVNSW--- 555

Query: 425 NHENSSDEHTIWQRICKHKQPVIEPRQSSNFPNAIEDYAAKLRDSSTTGAIFFAVCRGKV 484
                 +E  I Q I +HK   IE         A+++Y          GAIFF+V RGKV
Sbjct: 556 ------NEMGILQDIMQHKLVFIETPDVVETTLALDNYRKAC--DCGRGAIFFSVARGKV 607

Query: 485 SEGLDFADRAGRAVIVTGMPFATPTDPKVRLKRDYLDKLGSASNKNSKALTGEEWYXXXX 544
           +EG+DF    GR VI+ G+PF       +  + +YL        + +  +   ++     
Sbjct: 608 AEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYL--------RETFQIKEGDFLTFDA 659

Query: 545 XXXXXXXXXXXIRHRHDYGAIIYCDERFVWQNYQSQMSYWL 585
                      IR + DYG +I+ D+R+   + +S++  W+
Sbjct: 660 LRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWI 700




 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 19/154 (12%)

Query: 4   LGSREQMCIHEEVSKLRGRQQ-NNACHYLCKKRWCRHHNS-------VAEFMRN------ 49
           L SR+ +C+H + S    R   + AC  L    W R   +       + +F  +      
Sbjct: 107 LSSRKNLCVHPQASAAAARDSVDTACRRLTAS-WVRDRAASDPDSTPLCDFFESFDRAAA 165

Query: 50  ----NSELGSEACDIEDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLN 105
                S +      + DL  +GR +G CPY+++R++ K  +++   Y YLIDP     ++
Sbjct: 166 AGDLASYMPPGVYTLADLRALGRDRGICPYFLARQMVKYANVVVYSYQYLIDPKVASIVS 225

Query: 106 GIPWDNAVLIFDEAHNLESICADAASFDLLPNNL 139
                  V++FDEAHN++++C +A S  +    L
Sbjct: 226 REMQKECVVVFDEAHNIDNVCIEALSVSIRKQTL 259



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,849,404
Number of extensions: 1101006
Number of successful extensions: 2571
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2560
Number of HSP's successfully gapped: 4
Length of query: 876
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 766
Effective length of database: 11,292,261
Effective search space: 8649871926
Effective search space used: 8649871926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)