Os01g0592900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ATP-dependent helicase, DEAH-box family protein.
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Os01g0592900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ATP-dependent helicase, DEAH-box family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.98 | 0.376 | 8.75 | -0.295 | 1.28 | 0.381 | 0.482 | -6.05 | 0.306 | 19.5 | 31.2 | 4129 | -- | -- |
| 65.28 | 0.376 | 8.63 | 0.645 | 1.27 | -0.336 | 0.491 | -- | 0.374 | 19.5 | 25.9 | 5491 | -- | -- |
| 64.55 | 0.374 | 8.75 | -0.3 | 1.28 | 0.389 | -- | -6.04 | 0.314 | 19.5 | 32.25 | 4156 | -- | -- |
| 65.94 | 0.378 | 8.63 | 0.624 | 1.29 | -0.335 | -- | -- | 0.378 | 19.5 | 26.23 | 5501 | -- | -- |
| 151.24 | 0.573 | 8.8 | -0.996 | -- | 0.655 | -- | -8.2 | 0.201 | -- | 29.07 | 2789 | -- | -- |
| 69.54 | 0.391 | 8.64 | 0.513 | 1.29 | -- | 0.501 | -- | 0.36 | 19.4 | -- | -- | -- | -- |
| 70.22 | 0.392 | 8.63 | 0.502 | 1.3 | -- | -- | -- | 0.36 | 19.4 | -- | -- | -- | -- |
| 155.07 | 0.58 | 8.58 | 0.594 | -- | -0.32 | -- | -- | 0.411 | -- | 26.08 | 7088 | -- | -- |
| 74.94 | 0.403 | 8.65 | -- | 1.27 | -0.245 | -- | -- | 0.28 | 19.5 | 27.69 | 4187 | -- | -- |
| 159.45 | 0.59 | 8.6 | 0.481 | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
| 76.87 | 0.41 | 8.65 | -- | 1.29 | -- | -- | -- | 0.305 | 19.4 | -- | -- | -- | -- |
| 159.37 | 0.588 | 8.63 | -- | -- | -0.294 | -- | -- | 0.314 | -- | 34.06 | 6998 | -- | -- |
| 165.55 | 0.601 | 8.62 | -- | -- | -- | -- | -- | 0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.02 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 11 |
| 2 | 57.11 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 4 | 57.36 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 16 | 58.25 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 8 |
| 18 | 58.43 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 4 |
| 19 | 58.45 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 28 | 58.75 | humidity | 90.0 | 720 | < th | dose independent | rect. | 21 | 2 |
| 37 | 58.94 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 38 | 58.95 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 43 | 59.00 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 47 | 59.05 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 77 | 59.41 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 11 |
| 78 | 59.42 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 82 | 59.49 | temperature | 25.0 | 10 | > th | dose independent | rect. | 22 | 11 |
| 86 | 59.51 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 14 | 12 |
| 110 | 59.74 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 10 |
| 111 | 59.74 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 8 |
| 115 | 59.77 | temperature | 25.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 130 | 59.87 | temperature | 25.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 131 | 59.88 | temperature | 25.0 | 720 | > th | dose independent | rect. | 19 | 7 |
| 151 | 60.01 | humidity | 90.0 | 720 | > th | dose independent | rect. | 21 | 3 |
| 197 | 60.34 | humidity | 90.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 223 | 60.47 | temperature | 25.0 | 720 | > th | dose independent | sin | 13 | NA |
| 243 | 60.53 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 18 |
| 277 | 60.67 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 288 | 60.70 | temperature | 25.0 | 720 | < th | dose independent | sin | 13 | NA |
| 312 | 60.79 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 375 | 61.07 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 9 |
| 391 | 61.12 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 471 | 61.32 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 15 | 18 |
| 504 | 61.44 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 6 |
| 510 | 61.46 | humidity | 90.0 | 720 | > th | dose independent | rect. | 15 | 11 |
| 538 | 61.54 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 15 | 18 |
| 541 | 61.54 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 552 | 61.57 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 560 | 61.59 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 566 | 61.61 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 628 | 61.75 | humidity | 90.0 | 10 | < th | dose independent | rect. | 15 | 18 |
| 633 | 61.76 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 680 | 61.86 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 693 | 61.90 | humidity | 90.0 | 720 | > th | dose independent | sin | 16 | NA |
| 711 | 61.92 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 730 | 61.95 | temperature | 20.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 736 | 61.96 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 745 | 61.98 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 748 | 61.98 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 764 | 62.01 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 769 | 62.02 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 6 |
| 770 | 62.02 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 6 |
| 771 | 62.03 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 773 | 62.03 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 774 | 62.03 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 6 |
| 778 | 62.03 | wind | 9.0 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 779 | 62.04 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 785 | 62.04 | wind | 9.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 786 | 62.04 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 814 | 62.09 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 824 | 62.11 | humidity | 90.0 | 720 | < th | dose independent | rect. | 12 | 13 |
| 842 | 62.12 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 858 | 62.15 | wind | 9.0 | 30 | < th | dose independent | rect. | 15 | 18 |
| 871 | 62.18 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 6 |
| 876 | 62.18 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 885 | 62.20 | radiation | 40.0 | 30 | < th | dose independent | rect. | 15 | 18 |
| 936 | 62.28 | temperature | 20.0 | 10 | > th | dose dependent | sin | 9 | NA |
| 966 | 62.33 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 985 | 62.36 | humidity | 90.0 | 720 | < th | dose independent | rect. | 15 | 9 |