FiT-DB / Search/ Help/ Sample detail
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Os05g0144800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.51 | 0.32 | 7.93 | 1.39 | 0.664 | -0.844 | 0.125 | 3.03 | 0.566 | 23 | 24.58 | 1245 | -- | -- |
| 50.04 | 0.329 | 8.01 | 0.68 | 0.608 | -0.521 | 0.298 | -- | 0.481 | 22.8 | 23.87 | 8419 | -- | -- |
| 46.55 | 0.318 | 7.93 | 1.4 | 0.672 | -0.854 | -- | 3.11 | 0.571 | 23 | 24.54 | 1224 | -- | -- |
| 50.26 | 0.33 | 8 | 0.633 | 0.608 | -0.512 | -- | -- | 0.47 | 22.9 | 24.97 | 8372 | -- | -- |
| 70.08 | 0.39 | 7.9 | 1.54 | -- | -0.742 | -- | 3.24 | 0.623 | -- | 24.3 | 1469 | -- | -- |
| 60.1 | 0.363 | 8.05 | 0.437 | 0.576 | -- | 0.267 | -- | 0.288 | 22.5 | -- | -- | -- | -- |
| 60.38 | 0.364 | 8.05 | 0.425 | 0.574 | -- | -- | -- | 0.286 | 22.7 | -- | -- | -- | -- |
| 71.42 | 0.395 | 8.01 | 0.562 | -- | -0.64 | -- | -- | 0.392 | -- | 19.5 | 13077 | -- | -- |
| 59.64 | 0.36 | 8.03 | -- | 0.622 | -0.344 | -- | -- | 0.363 | 22.7 | 25.4 | 8320 | -- | -- |
| 80.69 | 0.42 | 8.03 | 0.436 | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
| 65.15 | 0.378 | 8.06 | -- | 0.577 | -- | -- | -- | 0.239 | 22.7 | -- | -- | -- | -- |
| 79.39 | 0.416 | 8.03 | -- | -- | -0.517 | -- | -- | 0.313 | -- | 19.5 | 13077 | -- | -- |
| 85.71 | 0.432 | 8.04 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.44 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 5 | 44.57 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 22 | 44.83 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 35 | 44.98 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 53 | 45.09 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 62 | 45.15 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 126 | 45.79 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 145 | 46.04 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 150 | 46.11 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 158 | 46.33 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 160 | 46.34 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 164 | 46.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 166 | 46.40 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 168 | 46.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 170 | 46.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 9 |
| 185 | 46.46 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 189 | 46.46 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 204 | 46.50 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 215 | 46.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 14 |
| 223 | 46.52 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 18 | NA |
| 248 | 46.55 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 18 | NA |
| 254 | 46.55 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 18 | NA |
| 265 | 46.58 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 297 | 46.64 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 315 | 46.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 12 |
| 316 | 46.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 319 | 46.70 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 339 | 46.73 | wind | 3.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 343 | 46.73 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 352 | 46.74 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 16 | NA |
| 365 | 46.75 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 370 | 46.76 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 400 | 46.81 | wind | 3.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 414 | 46.83 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 461 | 46.88 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 478 | 46.92 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 498 | 46.93 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 14 |
| 504 | 46.93 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 510 | 46.94 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 527 | 46.95 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 24 | 17 |
| 554 | 46.98 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 565 | 46.99 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 575 | 46.99 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 590 | 47.01 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 592 | 47.01 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 597 | 47.01 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 11 |
| 615 | 47.04 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 620 | 47.04 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 666 | 47.10 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 670 | 47.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 16 |
| 679 | 47.11 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 700 | 47.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 707 | 47.13 | wind | 3.0 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 711 | 47.13 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 714 | 47.13 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 729 | 47.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 21 |
| 740 | 47.15 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 767 | 47.17 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 796 | 47.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 19 |
| 799 | 47.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 808 | 47.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 819 | 47.20 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 854 | 47.22 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 855 | 47.22 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 877 | 47.24 | wind | 1.0 | 43200 | > th | dose dependent | sin | 2 | NA |
| 888 | 47.25 | wind | 9.0 | 43200 | < th | dose dependent | sin | 2 | NA |
| 899 | 47.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 917 | 47.27 | wind | 3.0 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 922 | 47.27 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 12 |
| 927 | 47.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 23 |
| 930 | 47.28 | wind | 3.0 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 983 | 47.31 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
